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Aliases for RNA5SP307 Gene

Subcategory (RNA class) for RNA5SP307 Gene

rRNA

Aliases for RNA5SP307 Gene

  • RNA, 5S Ribosomal Pseudogene 307 2 3 5
  • RNA, 5S Ribosomal 307 2 3
  • RN5S307 3

External Ids for RNA5SP307 Gene

ORGUL Members for RNA5SP307 Gene

Previous HGNC Symbols for RNA5SP307 Gene

  • RN5S307

Previous GeneCards Identifiers for RNA5SP307 Gene

  • GC10P026799

Summaries for RNA5SP307 Gene

GeneCards Summary for RNA5SP307 Gene

RNA5SP307 (RNA, 5S Ribosomal Pseudogene 307) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP307 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for RNA5SP307 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP307 Gene

Genomics for RNA5SP307 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP307 Gene

Promoters and enhancers for RNA5SP307 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I026506 Enhancer 0.3 dbSUPER 550.8 -1.4 -1394 4.2 ZNF121 RNA5SP307 GC10M026472 APBB1IP
GH10I026479 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -24.9 -24927 10.9 HDGF FOXA2 SMAD1 IRF4 RAD21 RARA RFX5 ZNF155 GTF3C2 SCRT2 APBB1IP YME1L1 ABI1 PDSS1 GC10M026472 RNA5SP307
GH10I026523 Enhancer 1.1 ENCODE dbSUPER 0.4 +14.7 14659 0.6 PKNOX1 FEZF1 GLIS2 ZNF213 ZNF302 KLF7 KLF13 SP3 TSHZ1 ZNF488 ANKRD26 GC10P026534 RNA5SP307 APBB1IP
GH10I026524 Enhancer 1 ENCODE dbSUPER 0.4 +15.1 15108 0.2 PKNOX1 FEZF1 BRCA1 ZEB1 ZNF335 ZNF302 ZNF366 ZNF350 KLF13 ZNF362 ANKRD26 GC10P026534 RNA5SP307 APBB1IP
GH10I026528 Enhancer 0.9 ENCODE dbSUPER 0.4 +19.2 19152 1.4 BMI1 BATF IRF4 RELA ZNF121 NFATC1 BCLAF1 IKZF2 RUNX3 JUNB GC10P026534 RNA5SP307 APBB1IP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP307 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP307 Gene

Genomic Locations for RNA5SP307 Gene
chr10:26,509,589-26,509,704
(GRCh38/hg38)
Size:
116 bases
Orientation:
Plus strand
chr10:26,798,518-26,798,633
(GRCh37/hg19)

Genomic View for RNA5SP307 Gene

Genes around RNA5SP307 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP307 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP307 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP307 Gene

ORGUL Member Location for RNA5SP307 Gene

ORGUL Member Location for RNA5SP307 gene

Proteins for RNA5SP307 Gene

Post-translational modifications for RNA5SP307 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP307 Gene

Domains & Families for RNA5SP307 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP307 Gene

Function for RNA5SP307 Gene

Phenotypes From GWAS Catalog for RNA5SP307 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP307 Gene

Localization for RNA5SP307 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP307 Gene

Pathways & Interactions for RNA5SP307 Gene

SuperPathways for RNA5SP307 Gene

No Data Available

Interacting Proteins for RNA5SP307 Gene

Gene Ontology (GO) - Biological Process for RNA5SP307 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP307 Gene

Drugs & Compounds for RNA5SP307 Gene

No Compound Related Data Available

Transcripts for RNA5SP307 Gene

mRNA/cDNA for RNA5SP307 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP307 Gene

No ASD Table

Relevant External Links for RNA5SP307 Gene

GeneLoc Exon Structure for
RNA5SP307
ECgene alternative splicing isoforms for
RNA5SP307

Expression for RNA5SP307 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP307 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP307 Gene:

RNA5SP307
genes like me logo Genes that share expression patterns with RNA5SP307: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP307 Gene

Orthologs for RNA5SP307 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP307 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia n-R5s180 34
  • 63 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 34
  • 55 (a)
ManyToMany
Species where no ortholog for RNA5SP307 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP307 Gene

ENSEMBL:
Gene Tree for RNA5SP307 (if available)
TreeFam:
Gene Tree for RNA5SP307 (if available)

Paralogs for RNA5SP307 Gene

No data available for Paralogs for RNA5SP307 Gene

Variants for RNA5SP307 Gene

Additional Variant Information for RNA5SP307 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP307

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP307 Gene

Disorders for RNA5SP307 Gene

No disorders were found for RNA5SP307 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP307 Gene

Publications for RNA5SP307 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for RNA5SP307 Gene

Sources for RNA5SP307 Gene

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