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Aliases for RNA5SP290 Gene

Subcategory (RNA class) for RNA5SP290 Gene

rRNA

Aliases for RNA5SP290 Gene

  • RNA, 5S Ribosomal Pseudogene 290 2 3 5
  • RNA, 5S Ribosomal 290 2 3
  • RN5S290 3

External Ids for RNA5SP290 Gene

ORGUL Members for RNA5SP290 Gene

Previous HGNC Symbols for RNA5SP290 Gene

  • RN5S290

Previous GeneCards Identifiers for RNA5SP290 Gene

  • GC09M101910
  • GC09M101911

Summaries for RNA5SP290 Gene

GeneCards Summary for RNA5SP290 Gene

RNA5SP290 (RNA, 5S Ribosomal Pseudogene 290) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP290 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP290 Gene

Genomics for RNA5SP290 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP290 Gene

Promoters and enhancers for RNA5SP290 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I099102 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +40.5 40462 5.2 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 GLIS2 ARID2 ZNF207 ZNF143 TGFBR1 INVS GALNT12 RNA5SP290 GC09M099146
GH09I099125 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +17.9 17917 5.2 BMI1 BATF IRF4 ZNF143 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CBFB GC09M099146 RNA5SP290 TGFBR1
GH09I099136 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +8.7 8704 0.9 SMARCE1 HDAC1 MEIS2 PKNOX1 TEAD4 CEBPB CEBPG ZEB2 EP300 CTBP1 GC09M099146 RNA5SP290 TGFBR1
GH09I099181 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -35.8 -35786 1.1 BMI1 BATF KLF5 IRF4 ZNF207 ZNF143 ATF7 ETV6 IKZF2 RUNX3 LOC105376174 ALG2 STX17 SEC61B GC09M099146 RNA5SP290
GH09I099118 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +26.2 26208 2.3 HDGF EBF1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 ZNF687 LOC105376174 TGFBR1 GC09M099146 RNA5SP290
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP290 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP290 Gene

Genomic Locations for RNA5SP290 Gene
chr9:99,145,840-99,145,966
(GRCh38/hg38)
Size:
127 bases
Orientation:
Minus strand
chr9:101,908,122-101,908,248
(GRCh37/hg19)

Genomic View for RNA5SP290 Gene

Genes around RNA5SP290 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP290 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP290 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP290 Gene

Proteins for RNA5SP290 Gene

Post-translational modifications for RNA5SP290 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP290 Gene

Domains & Families for RNA5SP290 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP290 Gene

Function for RNA5SP290 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP290 Gene

Localization for RNA5SP290 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP290 Gene

Pathways & Interactions for RNA5SP290 Gene

SuperPathways for RNA5SP290 Gene

No Data Available

Interacting Proteins for RNA5SP290 Gene

Gene Ontology (GO) - Biological Process for RNA5SP290 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP290 Gene

Drugs & Compounds for RNA5SP290 Gene

No Compound Related Data Available

Transcripts for RNA5SP290 Gene

mRNA/cDNA for RNA5SP290 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP290 Gene

No ASD Table

Relevant External Links for RNA5SP290 Gene

GeneLoc Exon Structure for
RNA5SP290
ECgene alternative splicing isoforms for
RNA5SP290

Expression for RNA5SP290 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP290 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP290 Gene:

RNA5SP290
genes like me logo Genes that share expression patterns with RNA5SP290: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP290 Gene

Orthologs for RNA5SP290 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP290 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 80 (a)
OneToMany
Species where no ortholog for RNA5SP290 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP290 Gene

ENSEMBL:
Gene Tree for RNA5SP290 (if available)
TreeFam:
Gene Tree for RNA5SP290 (if available)

Paralogs for RNA5SP290 Gene

No data available for Paralogs for RNA5SP290 Gene

Variants for RNA5SP290 Gene

Additional Variant Information for RNA5SP290 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP290

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP290 Gene

Disorders for RNA5SP290 Gene

No disorders were found for RNA5SP290 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP290 Gene

Publications for RNA5SP290 Gene

No publications were found for RNA5SP290 Gene.

Products for RNA5SP290 Gene

Sources for RNA5SP290 Gene

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