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Aliases for RNA5SP258 Gene

Subcategory (RNA class) for RNA5SP258 Gene

rRNA

Aliases for RNA5SP258 Gene

  • RNA, 5S Ribosomal Pseudogene 258 2 3 5
  • RNA, 5S Ribosomal 258 2 3
  • RN5S258 3

External Ids for RNA5SP258 Gene

ORGUL Members for RNA5SP258 Gene

Previous HGNC Symbols for RNA5SP258 Gene

  • RN5S258

Previous GeneCards Identifiers for RNA5SP258 Gene

  • GC08P025996

Summaries for RNA5SP258 Gene

GeneCards Summary for RNA5SP258 Gene

RNA5SP258 (RNA, 5S Ribosomal Pseudogene 258) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP258 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP258 Gene

Genomics for RNA5SP258 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP258 Gene

Promoters and enhancers for RNA5SP258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I026135 Enhancer 0.4 ENCODE 550.8 -1.5 -1520 0.2 JUND TCF7L2 GC08P026137 RNA5SP258 LOC105379335
GH08I026149 Enhancer 1 Ensembl ENCODE 0.4 +14.4 14391 3.7 KLF17 BRCA1 RAD21 RFX5 RCOR1 FOS CEBPB SREBF1 SP1 ZNF217 RNA5SP258 LOC105379336
GH08I026143 Enhancer 0.7 ENCODE 0.4 +6.5 6520 0.2 NCOA3 PKNOX1 CLOCK NFIB NEUROD1 CEBPG CTBP1 GATA3 ZNF444 RCOR1 RNA5SP258 LOC105379336
GH08I026203 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +67.7 67729 1.4 JUN USF2 ZNF398 EP300 BRCA1 ATF2 FOXA1 MITF SP1 GATA3 PPP2R2A LOC105379336 RNA5SP258
GH08I026189 Enhancer 0.9 ENCODE dbSUPER 0.2 +52.5 52527 0.5 SIX4 MAX ZEB2 BCL11B ZEB1 HIC1 ZSCAN21 ZFP69B ZNF664 ATF4 LOC105379336 RNA5SP258
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP258 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP258 Gene

Genomic Locations for RNA5SP258 Gene
chr8:26,136,880-26,136,998
(GRCh38/hg38)
Size:
119 bases
Orientation:
Plus strand
chr8:25,994,396-25,994,514
(GRCh37/hg19)

Genomic View for RNA5SP258 Gene

Genes around RNA5SP258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP258 Gene

Proteins for RNA5SP258 Gene

Post-translational modifications for RNA5SP258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP258 Gene

Domains & Families for RNA5SP258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP258 Gene

Function for RNA5SP258 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP258 Gene

Localization for RNA5SP258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP258 Gene

Pathways & Interactions for RNA5SP258 Gene

SuperPathways for RNA5SP258 Gene

No Data Available

Interacting Proteins for RNA5SP258 Gene

Gene Ontology (GO) - Biological Process for RNA5SP258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP258 Gene

Drugs & Compounds for RNA5SP258 Gene

No Compound Related Data Available

Transcripts for RNA5SP258 Gene

mRNA/cDNA for RNA5SP258 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP258 Gene

No ASD Table

Relevant External Links for RNA5SP258 Gene

GeneLoc Exon Structure for
RNA5SP258
ECgene alternative splicing isoforms for
RNA5SP258

Expression for RNA5SP258 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP258 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP258 Gene:

RNA5SP258
genes like me logo Genes that share expression patterns with RNA5SP258: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP258 Gene

Orthologs for RNA5SP258 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP258 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 72 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 34
  • 66 (a)
OneToOne
Species where no ortholog for RNA5SP258 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP258 Gene

ENSEMBL:
Gene Tree for RNA5SP258 (if available)
TreeFam:
Gene Tree for RNA5SP258 (if available)

Paralogs for RNA5SP258 Gene

No data available for Paralogs for RNA5SP258 Gene

Variants for RNA5SP258 Gene

Additional Variant Information for RNA5SP258 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP258

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP258 Gene

Disorders for RNA5SP258 Gene

No disorders were found for RNA5SP258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP258 Gene

Publications for RNA5SP258 Gene

No publications were found for RNA5SP258 Gene.

Products for RNA5SP258 Gene

Sources for RNA5SP258 Gene

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