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Aliases for RNA5SP257 Gene
Aliases for RNA5SP257 Gene
External Ids for RNA5SP257 Gene
- HGNC: 43157
- NCBI Entrez Gene: 100873511
- Ensembl: ENSG00000274467
Previous HGNC Symbols for RNA5SP257 Gene
- RN5S257
Previous GeneCards Identifiers for RNA5SP257 Gene
- GC08P020148
- GC08U901707
Summaries for RNA5SP257 Gene
GeneCards Summary for RNA5SP257 Gene
RNA5SP257 (RNA, 5S Ribosomal Pseudogene 257) is a Pseudogene.
Additional gene information for RNA5SP257 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP257 Gene
Genomics for RNA5SP257 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for RNA5SP257 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH08J020287 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 250.7 | -0.9 | -873 | 3.8 | ZIC2 ZNF571 SPI1 MYC MAX SP7 EGR2 POLR2A RAD21 ZFHX2 | RF00001-321 RNA5SP257 LZTS1 LZTS1-AS1 ATP6V1B2 | |
| GH08J020281 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.4 | -7.2 | -7173 | 2.8 | ZIC2 ZNF189 RCOR1 BHLHE40 GATA2 ZNF26 MAFK ZEB2 ZNF629 OSR2 | INTS10 RNU6-892P RNA5SP257 RF00001-321 LZTS1-AS1 LZTS1 ATP6V1B2 | |
| GH08J020276 | Enhancer | 0.9 | ENCODE dbSUPER | 0.4 | -12.8 | -12821 | 1.5 | ZNF395 VEZF1 GABPA NFE2 IRF9 STAT5A DIDO1 ZNF589 CAVIN1 TAF7 | LZTS1-AS1 LZTS1 INTS10 RNU6-892P RNA5SP257 RF00001-321 ATP6V1B2 | |
| GH08J020279 | Enhancer | 0.5 | ENCODE dbSUPER | 0.4 | -9.8 | -9792 | 1.1 | POLR2A MNT | RNU6-892P LZTS1-AS1 RNA5SP257 RF00001-321 LZTS1 ATP6V1B2 | |
| GH08J020284 | Enhancer | 0.3 | Ensembl dbSUPER | 0.4 | -5.3 | -5273 | 0.6 | RNA5SP257 RF00001-321 LZTS1-AS1 LZTS1 ATP6V1B2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RNA5SP257 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for RNA5SP257 Gene
Latest Assembly
- chr8:20,290,174-20,290,289
- (GRCh38/hg38)
- Size:
- 116 bases
- Orientation:
- Plus strand
Previous Assembly
- chr8:20,147,685-20,147,800
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 116 bases
- Orientation:
- Plus strand
Genomic View for RNA5SP257 Gene
Genes around RNA5SP257 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8p21.3 by HGNC
- 8p21.3 by Entrez Gene
- 8p21.3 by Ensembl
RNA5SP257 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNA5SP257 Gene
Proteins for RNA5SP257 Gene
Post-translational modifications for RNA5SP257 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP257
- Origene Custom Protein Services for RNA5SP257
Assay products for research
No data available for DME Specific Peptides for RNA5SP257 Gene
Domains & Families for RNA5SP257 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP257 Gene
Function for RNA5SP257 Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP257 - Starting at $85 >
- * RNA5SP257 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for RNA5SP257
miRNA products for research
Inhibitory RNAs for research
Clone products for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP257 Gene
Localization for RNA5SP257 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP257 Gene
Transcripts for RNA5SP257 Gene
mRNA/cDNA for RNA5SP257 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000363023 116 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for RNA5SP257 - Starting at $85 >
- * RNA5SP257 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for RNA5SP257
miRNA products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for RNA5SP257 Gene
- GeneLoc Exon Structure for
- RNA5SP257
Expression for RNA5SP257 Gene
No Expression Related Data Available
Primer products for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP257 Gene
Orthologs for RNA5SP257 Gene
No data available for Orthologs for RNA5SP257 Gene
Paralogs for RNA5SP257 Gene
No data available for Paralogs for RNA5SP257 Gene
Variants for RNA5SP257 Gene
Additional Variant Information for RNA5SP257 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNA5SP257
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP257 Gene
Disorders for RNA5SP257 Gene
No disorders were found for RNA5SP257 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP257 Gene
Publications for RNA5SP257 Gene
No publications were found for RNA5SP257 Gene.
No data available for Mastermind for RNA5SP257 Gene
Products for RNA5SP257 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNA5SP257
- Origene Custom Protein Services for RNA5SP257
- Browse OriGene Inhibitory RNA Products For RNA5SP257
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RNA5SP257
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RNA5SP257
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RNA5SP257
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RNA5SP257
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RNA5SP257
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RNA5SP257
Sources for RNA5SP257 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB