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Aliases for RNA5SP228 Gene

Aliases for RNA5SP228 Gene

  • RNA, 5S Ribosomal Pseudogene 228 2 3 5
  • RNA, 5S Ribosomal 228 2 3
  • RN5S228 3

External Ids for RNA5SP228 Gene

Previous HGNC Symbols for RNA5SP228 Gene

  • RN5S228

Summaries for RNA5SP228 Gene

GeneCards Summary for RNA5SP228 Gene

RNA5SP228 (RNA, 5S Ribosomal Pseudogene 228) is a Pseudogene.

Additional gene information for RNA5SP228 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP228 Gene

Genomics for RNA5SP228 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP228 Gene

Promoters and enhancers for RNA5SP228 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I024134 Enhancer 0.3 ENCODE 0.8 +2.3 2329 1.3 RUNX3 RNA5SP228 ENSG00000228944
GH07I024052 Enhancer 1 FANTOM5 ENCODE 0.2 -79.7 -79693 1.2 INSM2 MZF1 BRCA1 RFX5 ZNF335 ZNF366 SMARCC2 RCOR1 FOS SMARCC1 ENSG00000227930 NPY LOC105375188 RNA5SP228
GH07I024108 Enhancer 0.6 ENCODE 0.3 -23.2 -23160 1.6 ELF3 SOX5 SOX13 GATAD2A HMG20B EBF1 ZNF644 THRB ZNF48 TEAD3 OSBPL3 RNA5SP228 LOC105375188
GH07I024152 Enhancer 0.6 ENCODE 0.3 +20.4 20390 2 KLF1 L3MBTL2 MAX USF2 CEBPB FEZF1 ZNF335 JUND STAT3 ZNF143 RNA5SP228 ENSG00000228944
GH07I024074 Enhancer 0.7 ENCODE 0.2 -57.5 -57516 2.2 PKNOX1 FOXA2 MAX ZNF384 FEZF1 RAD21 RFX5 YY1 POLR2A HNF4G RNA5SP228 LOC105375188
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP228 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP228 Gene

Genomic Locations for RNA5SP228 Gene
chr7:24,132,705-24,132,837
(GRCh38/hg38)
Size:
133 bases
Orientation:
Plus strand
chr7:24,172,324-24,172,456
(GRCh37/hg19)

Genomic View for RNA5SP228 Gene

Genes around RNA5SP228 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP228 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP228 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP228 Gene

Proteins for RNA5SP228 Gene

Post-translational modifications for RNA5SP228 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP228 Gene

Domains & Families for RNA5SP228 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP228 Gene

Function for RNA5SP228 Gene

Phenotypes From GWAS Catalog for RNA5SP228 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP228 Gene

Localization for RNA5SP228 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP228 Gene

Pathways & Interactions for RNA5SP228 Gene

SuperPathways for RNA5SP228 Gene

No Data Available

Interacting Proteins for RNA5SP228 Gene

Gene Ontology (GO) - Biological Process for RNA5SP228 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP228 Gene

Drugs & Compounds for RNA5SP228 Gene

No Compound Related Data Available

Transcripts for RNA5SP228 Gene

mRNA/cDNA for RNA5SP228 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP228 Gene

No ASD Table

Relevant External Links for RNA5SP228 Gene

GeneLoc Exon Structure for
RNA5SP228
ECgene alternative splicing isoforms for
RNA5SP228

Expression for RNA5SP228 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP228 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP228 Gene:

RNA5SP228
genes like me logo Genes that share expression patterns with RNA5SP228: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP228 Gene

Orthologs for RNA5SP228 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP228 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 62 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia 5S_rRNA 34
  • 62 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 54 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 54 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 34
  • 50 (a)
ManyToMany
chicken
(Gallus gallus)
Aves 5S_rRNA 34
  • 51 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 34
  • 52 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii 5S_rRNA 34 34 34
  • 56 (a)
ManyToMany
Species where no ortholog for RNA5SP228 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNA5SP228 Gene

ENSEMBL:
Gene Tree for RNA5SP228 (if available)
TreeFam:
Gene Tree for RNA5SP228 (if available)

Paralogs for RNA5SP228 Gene

No data available for Paralogs for RNA5SP228 Gene

Variants for RNA5SP228 Gene

Additional Variant Information for RNA5SP228 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP228

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP228 Gene

Disorders for RNA5SP228 Gene

No disorders were found for RNA5SP228 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP228 Gene

Publications for RNA5SP228 Gene

No publications were found for RNA5SP228 Gene.

Products for RNA5SP228 Gene

Sources for RNA5SP228 Gene

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