Aliases for RNA5SP21 Gene

Aliases for RNA5SP21 Gene

  • RNA, 5S Ribosomal Pseudogene 21 2 3 5
  • RNA, 5S Ribosomal 21 2 3
  • RNA5SP21 5
  • RN5S21 3

External Ids for RNA5SP21 Gene

Previous HGNC Symbols for RNA5SP21 Gene

  • RN5S21

Previous GeneCards Identifiers for RNA5SP21 Gene

  • GC01P078248
  • GC01P077780
  • GC01P077782
  • GC01P077785
  • GC01P077788
  • GC01P077793

Summaries for RNA5SP21 Gene

GeneCards Summary for RNA5SP21 Gene

RNA5SP21 (RNA, 5S Ribosomal Pseudogene 21) is a Pseudogene.

Additional gene information for RNA5SP21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP21 Gene

Genomics for RNA5SP21 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J077778 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.1 97 2.4 BCLAF1 MYC SIX5 ZNF580 POLR2A ZNF10 YY1 MXD4 KLF11 SIN3A HSALNG0004593 MIGA1 RNA5SP21 GIPC2 ENSG00000219201 NEXN
GH01J077829 Enhancer 1 Ensembl ENCODE dbSUPER 10.8 +52.7 52737 6.7 IKZF1 JUND ZNF217 FOXA2 RUNX1 NFE2 PRDM6 GATA3 TCF7L2 FOXA1 RNA5SP21 MIGA1 ACTG1P21 USP33 IFI44 NEXN FUBP1 RF00017-220 NSRP1P1
GH01J077823 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.5 +45.1 45112 2.4 ZNF600 CEBPB CTCF SMC3 RAD21 SCRT1 JUND BHLHE40 HLF MYNN MIGA1 RNA5SP21 ACTG1P21 RF00017-220 NSRP1P1 NEXN
GH01J077686 Promoter/Enhancer 0.9 ENCODE CraniofacialAtlas 10.4 -92.3 -92291 0.7 POLR2A CTCF SIN3A TAF1 ZBTB33 EGR1 SP1 RAD21 ACTG1P21 MIGA1 RNA5SP21 GIPC2 ZZZ3 lnc-MIGA1-3 piR-32285-005 USP33
GH01J077926 Promoter 0.8 Ensembl 10.8 +147.2 147197 2.2 ATF4 JUNB L3MBTL2 ZSCAN4 SPI1 CDC5L ZNF512 RUNX3 ZSCAN29 BRD9 GIPC2 ENSG00000213560 RNU6-1102P MIGA1 RNA5SP21 ACTG1P21 NEXN MN308952 RF00017-221 NONHSAG001877.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP21 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP21 Gene

Latest Assembly
chr1:77,779,904-77,779,999
(GRCh38/hg38)
Size:
96 bases
Orientation:
Plus strand

Previous Assembly
chr1:78,245,589-78,245,684
(GRCh37/hg19 by Entrez Gene)
Size:
96 bases
Orientation:
Plus strand

chr1:78,245,589-78,245,684
(GRCh37/hg19 by Ensembl)
Size:
96 bases
Orientation:
Plus strand

Genomic View for RNA5SP21 Gene

Genes around RNA5SP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP21 Gene

Proteins for RNA5SP21 Gene

Post-translational modifications for RNA5SP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP21 Gene

Domains & Families for RNA5SP21 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP21 Gene

Function for RNA5SP21 Gene

Phenotypes From GWAS Catalog for RNA5SP21 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP21 Gene

Localization for RNA5SP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP21 Gene

Pathways & Interactions for RNA5SP21 Gene

PathCards logo

SuperPathways for RNA5SP21 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP21 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP21 Gene

Drugs & Compounds for RNA5SP21 Gene

No Compound Related Data Available

Transcripts for RNA5SP21 Gene

mRNA/cDNA for RNA5SP21 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP21 Gene

No ASD Table

Relevant External Links for RNA5SP21 Gene

GeneLoc Exon Structure for
RNA5SP21

Expression for RNA5SP21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP21 Gene

genes like me logo Genes that share expression patterns with RNA5SP21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP21 Gene

Orthologs for RNA5SP21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP21 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 30
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia 5S_rRNA 30 30
  • 64 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia n-R5s42 30
  • 64 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 30
  • 58 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia 5S_rRNA 30
  • 58 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 30
  • 54 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves 5S_rRNA 30
  • 53 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 30
  • 47 (a)
ManyToMany
Species where no ortholog for RNA5SP21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP21 Gene

ENSEMBL:
Gene Tree for RNA5SP21 (if available)
TreeFam:
Gene Tree for RNA5SP21 (if available)
Alliance of Genome Resources:
Additional Orthologs for RNA5SP21

Paralogs for RNA5SP21 Gene

No data available for Paralogs for RNA5SP21 Gene

Variants for RNA5SP21 Gene

Additional Variant Information for RNA5SP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP21
Leiden Open Variation Database (LOVD)
RNA5SP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP21 Gene

Disorders for RNA5SP21 Gene

No disorders were found for RNA5SP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP21 Gene

Publications for RNA5SP21 Gene

No publications were found for RNA5SP21 Gene.

No data available for Mastermind for RNA5SP21 Gene

Products for RNA5SP21 Gene

Sources for RNA5SP21 Gene