Aliases for RNA5SP200 Gene

Aliases for RNA5SP200 Gene

  • RNA, 5S Ribosomal Pseudogene 200 2 3 5
  • RNA, 5S Ribosomal 200 2 3
  • RN5S200 3

External Ids for RNA5SP200 Gene

Previous HGNC Symbols for RNA5SP200 Gene

  • RN5S200

Previous GeneCards Identifiers for RNA5SP200 Gene

  • GC05M172726

Summaries for RNA5SP200 Gene

GeneCards Summary for RNA5SP200 Gene

RNA5SP200 (RNA, 5S Ribosomal Pseudogene 200) is a Pseudogene.

Additional gene information for RNA5SP200 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP200 Gene

Genomics for RNA5SP200 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP200 Gene

Promoters and enhancers for RNA5SP200 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173293 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 750.6 -1.7 -1654 1.4 CTCF RBPJ MIXL1 CC2D1A L3MBTL2 ZNF121 RAD21 MNT ELF3 SP7 RNA5SP200 lnc-BNIP1-2 lnc-STC2-1
GH05J173290 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.9 1921 1.4 NR2F6 PPARG HNF1A ZNF384 REST GATAD2A SOX13 SAP130 FOXA2 NFIC RNA5SP200 lnc-BNIP1-1
GH05J173291 Enhancer 0.8 ENCODE CraniofacialAtlas 750.6 +0.3 342 1.4 SREBF1 ELF3 NCOA3 MLLT1 IKZF1 CREB1 PKNOX1 IKZF2 CTBP1 POLR2A RNA5SP200 lnc-BNIP1-1
GH05J173283 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 0.4 +8.7 8686 0.3 CTCF ZBTB6 MLX RBPJ USF2 MIXL1 NFYC L3MBTL2 RAD21 MNT ENSG00000204758 ENSG00000254295 RPL26L1 RNA5SP200 lnc-BNIP1-1
GH05J173278 Enhancer 0.6 VISTA dbSUPER 0.4 +12.9 12852 2.9 ZNF133 SCRT2 ADNP ZMYM3 ENSG00000204758 ENSG00000254295 RPL26L1 RNU6-500P UBTD2 lnc-BNIP1-1 LOC105377731 RNA5SP200
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP200 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP200 Gene

Genomic Locations for RNA5SP200 Gene
chr5:173,292,517-173,292,619
(GRCh38/hg38)
Size:
103 bases
Orientation:
Minus strand
chr5:172,719,520-172,719,622
(GRCh37/hg19)
Size:
103 bases
Orientation:
Minus strand

Genomic View for RNA5SP200 Gene

Genes around RNA5SP200 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP200 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP200 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP200 Gene

Proteins for RNA5SP200 Gene

Post-translational modifications for RNA5SP200 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP200 Gene

Domains & Families for RNA5SP200 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP200 Gene

Function for RNA5SP200 Gene

Phenotypes From GWAS Catalog for RNA5SP200 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP200 Gene

Localization for RNA5SP200 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP200 Gene

Pathways & Interactions for RNA5SP200 Gene

PathCards logo

SuperPathways for RNA5SP200 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP200 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP200 Gene

Drugs & Compounds for RNA5SP200 Gene

No Compound Related Data Available

Transcripts for RNA5SP200 Gene

mRNA/cDNA for RNA5SP200 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP200 Gene

No ASD Table

Relevant External Links for RNA5SP200 Gene

GeneLoc Exon Structure for
RNA5SP200
ECgene alternative splicing isoforms for
RNA5SP200

Expression for RNA5SP200 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP200 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP200 Gene:

RNA5SP200
genes like me logo Genes that share expression patterns with RNA5SP200: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP200 Gene

Orthologs for RNA5SP200 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP200 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 33
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24777 33
  • 55 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 33
  • 54 (a)
OneToOne
Species where no ortholog for RNA5SP200 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP200 Gene

ENSEMBL:
Gene Tree for RNA5SP200 (if available)
TreeFam:
Gene Tree for RNA5SP200 (if available)

Paralogs for RNA5SP200 Gene

No data available for Paralogs for RNA5SP200 Gene

Variants for RNA5SP200 Gene

Additional Variant Information for RNA5SP200 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP200

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP200 Gene

Disorders for RNA5SP200 Gene

No disorders were found for RNA5SP200 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP200 Gene

Publications for RNA5SP200 Gene

No publications were found for RNA5SP200 Gene.

Products for RNA5SP200 Gene

Sources for RNA5SP200 Gene