Aliases for RNA5SP20 Gene

Aliases for RNA5SP20 Gene

  • RNA, 5S Ribosomal Pseudogene 20 2 3 5
  • RNA, 5S Ribosomal 20 2 3
  • RNA5SP20 5
  • RN5S20 3

External Ids for RNA5SP20 Gene

Previous HGNC Symbols for RNA5SP20 Gene

  • RN5S20

Previous GeneCards Identifiers for RNA5SP20 Gene

  • GC01P078083

Summaries for RNA5SP20 Gene

GeneCards Summary for RNA5SP20 Gene

RNA5SP20 (RNA, 5S Ribosomal Pseudogene 20) is a Pseudogene.

Additional gene information for RNA5SP20 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP20 Gene

Genomics for RNA5SP20 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J077604 Enhancer 0.9 Ensembl ENCODE 0.4 -9.3 -9268 2.4 ZSCAN16 NFIC ZIC2 BHLHE40 ZBTB48 RAD51 NRF1 ZNF664 NFIB GLIS1 ZZZ3 GIPC2 AK5 RNA5SP20 lnc-USP33-2
GH01J077616 Enhancer 0.5 Ensembl 0.7 +3.7 3732 5.2 NFE2 CEBPB ZNF366 EMSY CEBPG ZZZ3 GIPC2 AK5 FUBP1 RNA5SP20 lnc-AK5-3
GH01J077591 Enhancer 0.6 Ensembl 0.4 -23.0 -22969 3.4 ZNF592 MAFF ZNF316 NFE2 ZFP91 MAFK NFE2L2 MAFG ARID1B CEBPB ZZZ3 GIPC2 AK5 NEXN DNAJB4 lnc-USP33-2 RNA5SP20
GH01J077639 Enhancer 0.6 Ensembl ENCODE 0.4 +24.4 24432 1 CEBPB CTCF JUNB RUNX3 ZZZ3 AK5 lnc-AK5-3 RNA5SP20 lnc-USP33-1
GH01J077631 Enhancer 0.4 Ensembl 0.4 +17.2 17231 1.4 MAFF ZNF316 MAFK lnc-AK5-3 RNA5SP20 ZZZ3 AK5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP20 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP20 Gene

Latest Assembly
chr1:77,614,869-77,614,952
(GRCh38/hg38)
Size:
84 bases
Orientation:
Plus strand

Previous Assembly
chr1:78,080,554-78,080,637
(GRCh37/hg19 by Entrez Gene)
Size:
84 bases
Orientation:
Plus strand

chr1:78,080,554-78,080,637
(GRCh37/hg19 by Ensembl)
Size:
84 bases
Orientation:
Plus strand

Genomic View for RNA5SP20 Gene

Genes around RNA5SP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP20 Gene

Proteins for RNA5SP20 Gene

Post-translational modifications for RNA5SP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP20 Gene

Domains & Families for RNA5SP20 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP20 Gene

Function for RNA5SP20 Gene

Phenotypes From GWAS Catalog for RNA5SP20 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP20 Gene

Localization for RNA5SP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP20 Gene

Pathways & Interactions for RNA5SP20 Gene

PathCards logo

SuperPathways for RNA5SP20 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP20 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP20 Gene

Drugs & Compounds for RNA5SP20 Gene

No Compound Related Data Available

Transcripts for RNA5SP20 Gene

mRNA/cDNA for RNA5SP20 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP20 Gene

No ASD Table

Relevant External Links for RNA5SP20 Gene

GeneLoc Exon Structure for
RNA5SP20

Expression for RNA5SP20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP20 Gene

genes like me logo Genes that share expression patterns with RNA5SP20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP20 Gene

Orthologs for RNA5SP20 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP20 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 30
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm26405 30
  • 65 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia 5S_rRNA 30
  • 49 (a)
ManyToMany
Species where no ortholog for RNA5SP20 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP20 Gene

ENSEMBL:
Gene Tree for RNA5SP20 (if available)
TreeFam:
Gene Tree for RNA5SP20 (if available)
Alliance of Genome Resources:
Additional Orthologs for RNA5SP20

Paralogs for RNA5SP20 Gene

No data available for Paralogs for RNA5SP20 Gene

Variants for RNA5SP20 Gene

Additional Variant Information for RNA5SP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP20
Leiden Open Variation Database (LOVD)
RNA5SP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP20 Gene

Disorders for RNA5SP20 Gene

No disorders were found for RNA5SP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP20 Gene

Publications for RNA5SP20 Gene

No publications were found for RNA5SP20 Gene.

No data available for Mastermind for RNA5SP20 Gene

Products for RNA5SP20 Gene

Sources for RNA5SP20 Gene