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Aliases for RNA5SP183 Gene

Subcategory (RNA class) for RNA5SP183 Gene

rRNA

Aliases for RNA5SP183 Gene

  • RNA, 5S Ribosomal Pseudogene 183 2 3 5
  • RNA, 5S Ribosomal 183 2 3
  • RN5S183 3

External Ids for RNA5SP183 Gene

ORGUL Members for RNA5SP183 Gene

Previous HGNC Symbols for RNA5SP183 Gene

  • RN5S183

Previous GeneCards Identifiers for RNA5SP183 Gene

  • GC05P055074

Summaries for RNA5SP183 Gene

GeneCards Summary for RNA5SP183 Gene

RNA5SP183 (RNA, 5S Ribosomal Pseudogene 183) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP183 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP183 Gene

Genomics for RNA5SP183 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP183 Gene

Promoters and enhancers for RNA5SP183 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I055711 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.6 -65.0 -65044 2 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF766 SLC38A9 DDX4 IL31RA DHX29 MTREX RNA5SP183 GC05P055648
GH05I055902 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.8 +126.2 126237 1.9 HDGF PKNOX1 BACH1 EBF1 BATF RELA FOSL1 POLR2A NFATC1 ZNF207 IL31RA RNA5SP183 SLC38A9 DDX4 ENSG00000262211 GC05P055845
GH05I055933 Enhancer 1.2 ENCODE dbSUPER 9.9 +156.8 156802 2.3 CLOCK ATF1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 ENSG00000262211 ENSG00000238326 RNA5SP183 SLC38A9 DDX4 RPL26P19 IL6ST GC05P055845
GH05I055897 Enhancer 0.9 Ensembl ENCODE 10.6 +120.4 120361 1.3 IRF2 EBF1 ZFHX2 POLR2A EGR1 RCOR1 IKZF2 CHD2 EGR2 NR2F1 IL31RA RNA5SP183 SLC38A9 DDX4 ENSG00000262211 GC05P055845
GH05I055923 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.2 +146.0 146032 1 ZNF687 POLR2A JUN IKZF1 ZBTB33 IKZF2 GABPA IL31RA FLJ31104 IL6ST RNA5SP183 SLC38A9 DDX4 ENSG00000262211 GC05P055845
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP183 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP183 Gene

Genomic Locations for RNA5SP183 Gene
chr5:55,777,469-55,777,587
(GRCh38/hg38)
Size:
119 bases
Orientation:
Plus strand
chr5:55,073,297-55,073,415
(GRCh37/hg19)

Genomic View for RNA5SP183 Gene

Genes around RNA5SP183 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP183 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP183 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP183 Gene

Proteins for RNA5SP183 Gene

Post-translational modifications for RNA5SP183 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP183 Gene

Domains & Families for RNA5SP183 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP183 Gene

Function for RNA5SP183 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP183 Gene

Localization for RNA5SP183 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP183 Gene

Pathways & Interactions for RNA5SP183 Gene

SuperPathways for RNA5SP183 Gene

No Data Available

Interacting Proteins for RNA5SP183 Gene

Gene Ontology (GO) - Biological Process for RNA5SP183 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP183 Gene

Drugs & Compounds for RNA5SP183 Gene

No Compound Related Data Available

Transcripts for RNA5SP183 Gene

mRNA/cDNA for RNA5SP183 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP183 Gene

No ASD Table

Relevant External Links for RNA5SP183 Gene

GeneLoc Exon Structure for
RNA5SP183
ECgene alternative splicing isoforms for
RNA5SP183

Expression for RNA5SP183 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP183 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP183 Gene:

RNA5SP183
genes like me logo Genes that share expression patterns with RNA5SP183: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP183 Gene

Orthologs for RNA5SP183 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP183 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 34 34
  • 79 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 34
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia n-R5s43 34
  • 76 (a)
ManyToMany
n-R5s74 34
  • 71 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 34
  • 75 (a)
ManyToMany
Species where no ortholog for RNA5SP183 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP183 Gene

ENSEMBL:
Gene Tree for RNA5SP183 (if available)
TreeFam:
Gene Tree for RNA5SP183 (if available)

Paralogs for RNA5SP183 Gene

No data available for Paralogs for RNA5SP183 Gene

Variants for RNA5SP183 Gene

Additional Variant Information for RNA5SP183 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP183

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP183 Gene

Disorders for RNA5SP183 Gene

No disorders were found for RNA5SP183 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP183 Gene

Publications for RNA5SP183 Gene

No publications were found for RNA5SP183 Gene.

Products for RNA5SP183 Gene

Sources for RNA5SP183 Gene

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