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RNA5SP152 Gene(Pseudogene)

RNA, 5S Ribosomal Pseudogene 152

GCID:
GC04P008396
GIFtS:
10
Genes Participants
UDN Logo

Aliases for RNA5SP152 Gene

Subcategory (RNA class) for RNA5SP152 Gene

rRNA

Aliases for RNA5SP152 Gene

  • RNA, 5S Ribosomal Pseudogene 152 2 3 5
  • RNA, 5S Ribosomal 152 2 3
  • RN5S152 3

External Ids for RNA5SP152 Gene

ORGUL Members for RNA5SP152 Gene

Previous HGNC Symbols for RNA5SP152 Gene

  • RN5S152

Summaries for RNA5SP152 Gene

GeneCards Summary for RNA5SP152 Gene

RNA5SP152 (RNA, 5S Ribosomal Pseudogene 152) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5SP152 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

View fRNAdb secondary structures for RNA5SP152

Additional gene information for RNA5SP152 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5SP152 Gene

Genomics for RNA5SP152 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNA5SP152 Gene

Promoters and enhancers for RNA5SP152 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04I008390 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 +0.3 303 5.6 PKNOX1 SMAD1 NFIB ZSCAN4 SIN3A BATF KLF5 IRF4 ZBTB40 GTF3C2 RNA5SP152 TRMT44 ENSG00000205959 ACOX3 ENSG00000251615 PIR54498
GH04I008383 Enhancer 0.8 ENCODE dbSUPER 0.4 -9.0 -8956 1.9 ESRRA ZNF687 ZNF449 BATF ATF2 ZIC2 GLIS2 NFIC IKZF1 ZBTB33 ENSG00000251615 RNA5SP152 PIR52873 ACOX3
GH04I008378 Enhancer 0.2 dbSUPER 0.4 -13.6 -13570 1.5 PIR52873 ENSG00000251615 RNA5SP152 ACOX3
GH04I008380 Enhancer 0.2 dbSUPER 0.4 -11.5 -11481 2.6 ENSG00000251615 PIR52873 RNA5SP152 ACOX3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP152 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP152 Gene

Genomic Locations for RNA5SP152 Gene
chr4:8,393,015-8,393,124
(GRCh38/hg38)
Size:
110 bases
Orientation:
Plus strand
chr4:8,394,742-8,394,851
(GRCh37/hg19)

Genomic View for RNA5SP152 Gene

Genes around RNA5SP152 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP152 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP152 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNA5SP152 Gene

ORGUL Member Location for RNA5SP152 Gene

ORGUL Member Location for RNA5SP152 gene

Proteins for RNA5SP152 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNA5SP152 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP152 Gene

Domains & Families for RNA5SP152 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP152 Gene

Function for RNA5SP152 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP152 Gene

Localization for RNA5SP152 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP152 Gene

Pathways & Interactions for RNA5SP152 Gene

SuperPathways for RNA5SP152 Gene

PathCards logo More details on SuperPathways for RNA5SP152
No Data Available

Interacting Proteins for RNA5SP152 Gene

Gene Ontology (GO) - Biological Process for RNA5SP152 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP152 Gene

Drugs & Compounds for RNA5SP152 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNA5SP152 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

fRNAdb Secondary structures for RNA5SP152 Gene

  • RF00001;5S_rRNA;AADB02006120.1/182864-182755

mRNA/cDNA for RNA5SP152 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP152 Gene

No ASD Table

Relevant External Links for RNA5SP152 Gene

GeneLoc Exon Structure for
RNA5SP152
ECgene alternative splicing isoforms for
RNA5SP152

Expression for RNA5SP152 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP152 Gene

mRNA expression in normal human tissues for RNA5SP152 Gene
mRNA expression by GTEx for RNA5SP152 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP152 Gene:

RNA5SP152
genes like me logo Genes that share expression patterns with RNA5SP152: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP152 Gene

Orthologs for RNA5SP152 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP152 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia 5S_rRNA 34
  • 95 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia 5S_rRNA 34
  • 80 (a)
 ManyToMany
mouse
(Mus musculus)
 Mammalia Gm23764 34
  • 69 (a)
 ManyToMany
oppossum
(Monodelphis domestica)
 Mammalia 5S_rRNA 34
  • 67 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia 5S_rRNA 34
  • 66 (a)
 ManyToMany
Species where no ortholog for RNA5SP152 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP152 Gene

ENSEMBL:
Gene Tree for RNA5SP152 (if available)
TreeFam:
Gene Tree for RNA5SP152 (if available)

Paralogs for RNA5SP152 Gene

No data available for Paralogs for RNA5SP152 Gene

Variants for RNA5SP152 Gene

Additional Variant Information for RNA5SP152 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP152

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP152 Gene

Disorders for RNA5SP152 Gene

No disorders were found for RNA5SP152 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP152 Gene

Publications for RNA5SP152 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for RNA5SP152 Gene

Sources for RNA5SP152 Gene

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