Aliases for RNA5SP145 Gene

Aliases for RNA5SP145 Gene

  • RNA, 5S Ribosomal Pseudogene 145 2 3 5
  • RNA, 5S Ribosomal 145 2 3
  • RN5S145 3

External Ids for RNA5SP145 Gene

Previous HGNC Symbols for RNA5SP145 Gene

  • RN5S145

Previous GeneCards Identifiers for RNA5SP145 Gene

  • GC03P150907

Summaries for RNA5SP145 Gene

GeneCards Summary for RNA5SP145 Gene

RNA5SP145 (RNA, 5S Ribosomal Pseudogene 145) is a Pseudogene.

Additional gene information for RNA5SP145 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP145 Gene

Genomics for RNA5SP145 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP145 Gene

Promoters and enhancers for RNA5SP145 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J151189 Enhancer 0.2 Ensembl 500.7 +0.8 802 0.2 MF281437-038 RF00001-229 RNA5SP145 P2RY14 GPR171 MED12L
GH03J151199 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 0.4 +13.5 13494 4.3 EP300 BCL11A NFIC ZNF384 NFATC3 NFIB TBX21 NFATC1 PAX5 NFIA GPR171 P2RY14 AADAC AADACL2 MF281437-038 RNA5SP145 RF00001-229 MED12L
GH03J151182 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.7 -4.8 -4798 2.2 USF1 GATA3 ZSCAN16 HMG20A HLF GATA2 SREBF1 P2RY14 MED12L GPR87 GPR171 AADAC MF281437-038 RF00001-229 RNA5SP145 hsa-miR-1273e-049
GH03J151198 Enhancer 1.1 Ensembl dbSUPER 0.4 +10.7 10701 0.8 EP300 POLR2G NCOR1 KDM6A TCF7 ZBTB25 SMARCC2 SKI TEAD1 TBX3 GPR171 MF281437-038 RNA5SP145 RF00001-229 MED12L
GH03J151178 Enhancer 0.8 Ensembl 0.4 -9.6 -9618 0.6 EP300 FOXK2 KDM6A TCF7 FOXA1 TEAD1 TBX3 ZKSCAN8 ZSCAN9 FOXA2 P2RY14 MED12L MF281437-038 hsa-miR-1273e-049 RNA5SP145 RF00001-229
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP145 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP145 Gene

Genomic Locations for RNA5SP145 Gene
chr3:151,188,099-151,188,223
(GRCh38/hg38)
Size:
125 bases
Orientation:
Plus strand
chr3:150,905,886-150,906,010
(GRCh37/hg19)
Size:
125 bases
Orientation:
Plus strand

Genomic View for RNA5SP145 Gene

Genes around RNA5SP145 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP145 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP145 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP145 Gene

Proteins for RNA5SP145 Gene

Post-translational modifications for RNA5SP145 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP145 Gene

Domains & Families for RNA5SP145 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP145 Gene

Function for RNA5SP145 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP145 Gene

Localization for RNA5SP145 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP145 Gene

Pathways & Interactions for RNA5SP145 Gene

PathCards logo

SuperPathways for RNA5SP145 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNA5SP145 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP145 Gene

Drugs & Compounds for RNA5SP145 Gene

No Compound Related Data Available

Transcripts for RNA5SP145 Gene

mRNA/cDNA for RNA5SP145 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP145 Gene

No ASD Table

Relevant External Links for RNA5SP145 Gene

GeneLoc Exon Structure for
RNA5SP145

Expression for RNA5SP145 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP145 Gene

genes like me logo Genes that share expression patterns with RNA5SP145: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP145 Gene

Orthologs for RNA5SP145 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP145 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 31
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 31
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 31
  • 73 (a)
OneToOne
Species where no ortholog for RNA5SP145 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP145 Gene

ENSEMBL:
Gene Tree for RNA5SP145 (if available)
TreeFam:
Gene Tree for RNA5SP145 (if available)

Paralogs for RNA5SP145 Gene

No data available for Paralogs for RNA5SP145 Gene

Variants for RNA5SP145 Gene

Additional Variant Information for RNA5SP145 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP145

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP145 Gene

Disorders for RNA5SP145 Gene

No disorders were found for RNA5SP145 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP145 Gene

Publications for RNA5SP145 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54

Products for RNA5SP145 Gene

Sources for RNA5SP145 Gene