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Aliases for RNA5SP122 Gene

Subcategory (RNA class) for RNA5SP122 Gene

rRNA

Aliases for RNA5SP122 Gene

  • RNA, 5S Ribosomal Pseudogene 122 2 3 5
  • RNA, 5S Ribosomal 122 2 3
  • RN5S122 3

External Ids for RNA5SP122 Gene

ORGUL Members for RNA5SP122 Gene

Previous HGNC Symbols for RNA5SP122 Gene

  • RN5S122

Previous GeneCards Identifiers for RNA5SP122 Gene

  • GC02P242526

Summaries for RNA5SP122 Gene

GeneCards Summary for RNA5SP122 Gene

RNA5SP122 (RNA, 5S Ribosomal Pseudogene 122) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP122 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP122 Gene

Genomics for RNA5SP122 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP122 Gene

Promoters and enhancers for RNA5SP122 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I241584 Enhancer 0.7 ENCODE 550.8 -0.2 -173 0.9 BACH1 BMI1 E4F1 ZNF316 NFE2 FOS MAFK NFE2L2 ZNF639 RFX1 RNA5SP122 GC02P241587 BOK BOK-AS1 ANO7 PPP1R7 PASK ENSG00000229996 ENSG00000273113 THAP4
GH02I241616 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 7.4 +34.0 34039 4.1 HDGF PKNOX1 ARNT GLI4 YY1 ETS1 ZNF143 FOS KLF13 SP3 THAP4 ING5 ENSG00000223374 SNED1 ENSG00000235351 MTERF4 FARP2 BOK D2HGDH DTYMK
GH02I241609 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 7.3 +25.3 25279 2.1 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 GLIS2 ELK1 ZNF207 BOK ENSG00000223374 BOK-AS1 D2HGDH SNED1 ANO7 ENSG00000235351 RNA5SP122 ATG4B THAP4
GH02I241635 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 5.5 +52.6 52634 4 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 YY1 ZNF766 E2F8 ZNF207 ZNF143 ATG4B THAP4 BOK RNA5SP122 ING5 GC02M241661
GH02I241641 Enhancer 0.9 Ensembl ENCODE 6.5 +57.0 57033 0.8 SOX13 MXI1 SAP130 ARID4B KMT2B RAD21 THRB RARA NR2F6 GATAD2A D2HGDH ENSG00000234793 ING5 RNA5SP122 ENSG00000235351 THAP4 ATG4B GC02M241661
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP122 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP122 Gene

Genomic Locations for RNA5SP122 Gene
chr2:241,584,968-241,585,075
(GRCh38/hg38)
Size:
108 bases
Orientation:
Plus strand
chr2:242,524,383-242,524,490
(GRCh37/hg19)

Genomic View for RNA5SP122 Gene

Genes around RNA5SP122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP122 Gene

Proteins for RNA5SP122 Gene

Post-translational modifications for RNA5SP122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP122 Gene

Domains & Families for RNA5SP122 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP122 Gene

Function for RNA5SP122 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP122 Gene

Localization for RNA5SP122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP122 Gene

Pathways & Interactions for RNA5SP122 Gene

SuperPathways for RNA5SP122 Gene

No Data Available

Interacting Proteins for RNA5SP122 Gene

Gene Ontology (GO) - Biological Process for RNA5SP122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP122 Gene

Drugs & Compounds for RNA5SP122 Gene

No Compound Related Data Available

Transcripts for RNA5SP122 Gene

mRNA/cDNA for RNA5SP122 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP122 Gene

No ASD Table

Relevant External Links for RNA5SP122 Gene

GeneLoc Exon Structure for
RNA5SP122
ECgene alternative splicing isoforms for
RNA5SP122

Expression for RNA5SP122 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP122 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP122 Gene:

RNA5SP122
genes like me logo Genes that share expression patterns with RNA5SP122: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP122 Gene

Orthologs for RNA5SP122 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP122 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 75 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 65 (a)
ManyToMany
Species where no ortholog for RNA5SP122 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP122 Gene

ENSEMBL:
Gene Tree for RNA5SP122 (if available)
TreeFam:
Gene Tree for RNA5SP122 (if available)

Paralogs for RNA5SP122 Gene

No data available for Paralogs for RNA5SP122 Gene

Variants for RNA5SP122 Gene

Additional Variant Information for RNA5SP122 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP122

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP122 Gene

Disorders for RNA5SP122 Gene

No disorders were found for RNA5SP122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP122 Gene

Publications for RNA5SP122 Gene

No publications were found for RNA5SP122 Gene.

Products for RNA5SP122 Gene

Sources for RNA5SP122 Gene

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