Aliases for RNA5SP121 Gene

Aliases for RNA5SP121 Gene

  • RNA, 5S Ribosomal Pseudogene 121 2 3 5
  • RNA, 5S Ribosomal 121 2 3
  • RNA5SP121 5
  • RN5S121 3

External Ids for RNA5SP121 Gene

Previous HGNC Symbols for RNA5SP121 Gene

  • RN5S121

Previous GeneCards Identifiers for RNA5SP121 Gene

  • GC02M228630

Summaries for RNA5SP121 Gene

GeneCards Summary for RNA5SP121 Gene

RNA5SP121 (RNA, 5S Ribosomal Pseudogene 121) is a Pseudogene.

Additional gene information for RNA5SP121 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP121 Gene

Genomics for RNA5SP121 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5SP121 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J227759 Enhancer 1 Ensembl ENCODE 250.7 +1.9 1924 4.4 ZMYM3 CEBPA MNT THAP11 FOXA2 ZNF623 SMAD4 RXRA ETV4 MIER3 RNA5SP121 SCYGR8 CCL20
GH02J227765 Enhancer 1.1 Ensembl ENCODE 0.7 -3.1 -3146 1.4 ZNF654 SSRP1 KLF9 CEBPA YY1 MXD4 REST KLF11 TRIM22 ZFP64 RNA5SP121 lnc-SLC19A3-2 SNRPGP8 SCYGR8 CCL20
GH02J227772 Enhancer 0.8 Ensembl 0.4 -10.5 -10549 2.2 CEBPA CHD4 KLF11 FEZF1 HOMEZ CTCF KMT2B THAP11 FOXA2 ZNF610 CCL20 SNRPGP8 lnc-SLC19A3-2 RNA5SP121 SCYGR8
GH02J227757 Enhancer 0.5 Ensembl ENCODE 0.4 +5.9 5914 0.5 RAD21 KDM1A RNA5SP121 SCYGR8 CCL20
GH02J227769 Enhancer 0.3 Ensembl 0.4 -6.6 -6649 0.4 SPI1 SNRPGP8 lnc-SLC19A3-2 RNA5SP121 SCYGR8 CCL20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP121 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5SP121 Gene

Latest Assembly
chr2:227,763,052-227,763,152
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand

Previous Assembly
chr2:228,627,768-228,627,868
(GRCh37/hg19 by Entrez Gene)
Size:
101 bases
Orientation:
Minus strand

chr2:228,627,768-228,627,868
(GRCh37/hg19 by Ensembl)
Size:
101 bases
Orientation:
Minus strand

Genomic View for RNA5SP121 Gene

Genes around RNA5SP121 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP121 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP121 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP121 Gene

Proteins for RNA5SP121 Gene

Post-translational modifications for RNA5SP121 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP121 Gene

Domains & Families for RNA5SP121 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP121 Gene

Function for RNA5SP121 Gene

Phenotypes From GWAS Catalog for RNA5SP121 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP121 Gene

Localization for RNA5SP121 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP121 Gene

Pathways & Interactions for RNA5SP121 Gene

PathCards logo

SuperPathways for RNA5SP121 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5SP121 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP121 Gene

Drugs & Compounds for RNA5SP121 Gene

No Compound Related Data Available

Transcripts for RNA5SP121 Gene

mRNA/cDNA for RNA5SP121 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP121 Gene

No ASD Table

Relevant External Links for RNA5SP121 Gene

GeneLoc Exon Structure for
RNA5SP121

Expression for RNA5SP121 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP121 Gene

genes like me logo Genes that share expression patterns with RNA5SP121: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP121 Gene

Orthologs for RNA5SP121 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP121 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 30
  • 72 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia 5S_rRNA 30
  • 63 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia 5S_rRNA 30
  • 49 (a)
ManyToMany
Species where no ortholog for RNA5SP121 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNA5SP121 Gene

ENSEMBL:
Gene Tree for RNA5SP121 (if available)
TreeFam:
Gene Tree for RNA5SP121 (if available)
Alliance of Genome Resources:
Additional Orthologs for RNA5SP121

Paralogs for RNA5SP121 Gene

No data available for Paralogs for RNA5SP121 Gene

Variants for RNA5SP121 Gene

Additional Variant Information for RNA5SP121 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP121
Leiden Open Variation Database (LOVD)
RNA5SP121

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP121 Gene

Disorders for RNA5SP121 Gene

No disorders were found for RNA5SP121 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP121 Gene

Publications for RNA5SP121 Gene

No publications were found for RNA5SP121 Gene.

Products for RNA5SP121 Gene

Sources for RNA5SP121 Gene