Aliases for RNA5SP116 Gene

Aliases for RNA5SP116 Gene

  • RNA, 5S Ribosomal Pseudogene 116 2 3 5
  • RNA, 5S Ribosomal 116 2 3
  • RN5S116 3

External Ids for RNA5SP116 Gene

Previous HGNC Symbols for RNA5SP116 Gene

  • RN5S116

Previous GeneCards Identifiers for RNA5SP116 Gene

  • GC02M208924

Summaries for RNA5SP116 Gene

GeneCards Summary for RNA5SP116 Gene

RNA5SP116 (RNA, 5S Ribosomal Pseudogene 116) is a Pseudogene.

Additional gene information for RNA5SP116 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP116 Gene

Genomics for RNA5SP116 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP116 Gene

Promoters and enhancers for RNA5SP116 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J208052 Enhancer 0.2 Ensembl 500.7 +1.5 1458 0.8 RNA5SP116 FZD5 RNU6-360P PLEKHM3
GH02J208047 Enhancer 0.5 Ensembl 0.4 +5.5 5457 3.2 TAL1 SCRT1 TCF12 KLF1 TEAD4 GATA1 ARID1B CBFA2T2 CBFA2T3 SCRT2 FZD5 ENSG00000185078 PLEKHM3 RNA5SP116
GH02J208051 Enhancer 0.3 Ensembl 0.7 +2.5 2457 0.4 FOXA1 FZD5 RNA5SP116 PLEKHM3
GH02J208043 Enhancer 0.4 Ensembl 0.4 +11.0 10957 1 GATA3 ATF4 ZC3H11A POU5F1 KAT8 FZD5 PLEKHM3 RNA5SP116
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP116 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP116 Gene

Genomic Locations for RNA5SP116 Gene
chr2:208,054,161-208,054,258
(GRCh38/hg38)
Size:
98 bases
Orientation:
Minus strand
chr2:208,918,885-208,918,982
(GRCh37/hg19)
Size:
98 bases
Orientation:
Minus strand

Genomic View for RNA5SP116 Gene

Genes around RNA5SP116 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP116 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP116 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP116 Gene

Proteins for RNA5SP116 Gene

Post-translational modifications for RNA5SP116 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP116 Gene

Domains & Families for RNA5SP116 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP116 Gene

Function for RNA5SP116 Gene

Phenotypes From GWAS Catalog for RNA5SP116 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP116 Gene

Localization for RNA5SP116 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP116 Gene

Pathways & Interactions for RNA5SP116 Gene

PathCards logo

SuperPathways for RNA5SP116 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNA5SP116 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP116 Gene

Drugs & Compounds for RNA5SP116 Gene

No Compound Related Data Available

Transcripts for RNA5SP116 Gene

mRNA/cDNA for RNA5SP116 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP116 Gene

No ASD Table

Relevant External Links for RNA5SP116 Gene

GeneLoc Exon Structure for
RNA5SP116

Expression for RNA5SP116 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP116 Gene

genes like me logo Genes that share expression patterns with RNA5SP116: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP116 Gene

Orthologs for RNA5SP116 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP116 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 31 31
  • 71 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 31
  • 60 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23114 31
  • 56 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 31
  • 55 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 31
  • 37 (a)
ManyToMany
Species where no ortholog for RNA5SP116 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP116 Gene

ENSEMBL:
Gene Tree for RNA5SP116 (if available)
TreeFam:
Gene Tree for RNA5SP116 (if available)

Paralogs for RNA5SP116 Gene

No data available for Paralogs for RNA5SP116 Gene

Variants for RNA5SP116 Gene

Additional Variant Information for RNA5SP116 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP116

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP116 Gene

Disorders for RNA5SP116 Gene

No disorders were found for RNA5SP116 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP116 Gene

Publications for RNA5SP116 Gene

No publications were found for RNA5SP116 Gene.

Products for RNA5SP116 Gene

Sources for RNA5SP116 Gene