Aliases for RNA5SP111 Gene

Aliases for RNA5SP111 Gene

  • RNA, 5S Ribosomal Pseudogene 111 2 3 5
  • RNA, 5S Ribosomal 111 2 3
  • RN5S111 3

External Ids for RNA5SP111 Gene

Previous HGNC Symbols for RNA5SP111 Gene

  • RN5S111

Previous GeneCards Identifiers for RNA5SP111 Gene

  • GC02M165756

Summaries for RNA5SP111 Gene

GeneCards Summary for RNA5SP111 Gene

RNA5SP111 (RNA, 5S Ribosomal Pseudogene 111) is a Pseudogene.

Additional gene information for RNA5SP111 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5SP111 Gene

Genomics for RNA5SP111 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP111 Gene

Promoters and enhancers for RNA5SP111 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5SP111 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP111 Gene

Genomic Locations for RNA5SP111 Gene
chr2:164,895,677-164,895,777
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand
chr2:165,752,187-165,752,287
(GRCh37/hg19)
Size:
101 bases
Orientation:
Minus strand

Genomic View for RNA5SP111 Gene

Genes around RNA5SP111 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP111 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP111 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP111 Gene

Proteins for RNA5SP111 Gene

Post-translational modifications for RNA5SP111 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP111 Gene

Domains & Families for RNA5SP111 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5SP111 Gene

Function for RNA5SP111 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP111 Gene

Localization for RNA5SP111 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP111 Gene

Pathways & Interactions for RNA5SP111 Gene

PathCards logo

SuperPathways for RNA5SP111 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNA5SP111 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5SP111 Gene

Drugs & Compounds for RNA5SP111 Gene

No Compound Related Data Available

Transcripts for RNA5SP111 Gene

mRNA/cDNA for RNA5SP111 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP111 Gene

No ASD Table

Relevant External Links for RNA5SP111 Gene

GeneLoc Exon Structure for
RNA5SP111

Expression for RNA5SP111 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP111 Gene

mRNA differential expression in normal tissues according to GTEx for RNA5SP111 Gene

This gene is overexpressed in Spleen (x4.1).
genes like me logo Genes that share expression patterns with RNA5SP111: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP111 Gene

Orthologs for RNA5SP111 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP111 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 31
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25885 31
  • 59 (a)
OneToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 31
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 31
  • 59 (a)
OneToMany
Species where no ortholog for RNA5SP111 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP111 Gene

ENSEMBL:
Gene Tree for RNA5SP111 (if available)
TreeFam:
Gene Tree for RNA5SP111 (if available)

Paralogs for RNA5SP111 Gene

No data available for Paralogs for RNA5SP111 Gene

Variants for RNA5SP111 Gene

Additional Variant Information for RNA5SP111 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP111

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP111 Gene

Disorders for RNA5SP111 Gene

No disorders were found for RNA5SP111 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP111 Gene

Publications for RNA5SP111 Gene

No publications were found for RNA5SP111 Gene.

Products for RNA5SP111 Gene

Sources for RNA5SP111 Gene