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Aliases for RNA5S4 Gene

Subcategory (RNA class) for RNA5S4 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for RNA5S4 Gene

  • RNA, 5S Ribosomal 4 2 3 5
  • 5S RRNA 4 2 3
  • RN5S4 3

External Ids for RNA5S4 Gene

Previous HGNC Symbols for RNA5S4 Gene

  • RN5S4

Previous GeneCards Identifiers for RNA5S4 Gene

  • GC01M228753

Summaries for RNA5S4 Gene

GeneCards Summary for RNA5S4 Gene

RNA5S4 (RNA, 5S Ribosomal 4) is an RNA Gene, and is affiliated with the non-coding RNA class. Among its related pathways are Viral mRNA Translation and Ribosome biogenesis in eukaryotes.

Additional gene information for RNA5S4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5S4 Gene

Genomics for RNA5S4 Gene

GeneHancer (GH) Regulatory Elements for RNA5S4 Gene

Promoters and enhancers for RNA5S4 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I228617 Promoter 0.5 Ensembl 550.8 -0.2 -192 0.6 RNA5S4 RNA5S5
GH01I228614 Promoter 0.5 Ensembl 0.8 +2.1 2108 0.8 RNA5S3 RNA5S4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5S4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5S4 Gene

Genomic Locations for RNA5S4 Gene
121 bases
Minus strand

Genomic View for RNA5S4 Gene

Genes around RNA5S4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5S4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5S4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5S4 Gene

Proteins for RNA5S4 Gene

Post-translational modifications for RNA5S4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5S4 Gene

Domains & Families for RNA5S4 Gene

Gene Families for RNA5S4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNA5S4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5S4 Gene

Function for RNA5S4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5S4 Gene

Localization for RNA5S4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5S4 Gene

Pathways & Interactions for RNA5S4 Gene

genes like me logo Genes that share pathways with RNA5S4: view

Pathways by source for RNA5S4 Gene

2 KEGG pathways for RNA5S4 Gene

Interacting Proteins for RNA5S4 Gene

Gene Ontology (GO) - Biological Process for RNA5S4 Gene


No data available for SIGNOR curated interactions for RNA5S4 Gene

Drugs & Compounds for RNA5S4 Gene

No Compound Related Data Available

Transcripts for RNA5S4 Gene

mRNA/cDNA for RNA5S4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5S4 Gene

No ASD Table

Relevant External Links for RNA5S4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNA5S4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5S4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5S4 Gene:

genes like me logo Genes that share expression patterns with RNA5S4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5S4 Gene

Orthologs for RNA5S4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5S4 Gene

Organism Taxonomy Gene Similarity Type Details
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 100 (a)
(Mus musculus)
Mammalia n-R5s138 34
  • 100 (a)
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 34
  • 100 (a)
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 100 (a)
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 96 (a)
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 94 (a)
Species where no ortholog for RNA5S4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5S4 Gene

Gene Tree for RNA5S4 (if available)
Gene Tree for RNA5S4 (if available)

Paralogs for RNA5S4 Gene

No data available for Paralogs for RNA5S4 Gene

Variants for RNA5S4 Gene

Sequence variations from dbSNP and Humsavar for RNA5S4 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs61825671 -- 228,616,524(-) C/T downstream_transcript_variant
rs61825672 -- 228,616,611(-) A/G/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNA5S4 Gene

Variant ID Type Subtype PubMed ID
dgv287n106 CNV duplication 24896259
dgv9n6 CNV deletion 16902084
esv24714 CNV gain+loss 19812545
esv32853 CNV gain 17666407
nsv1013500 CNV gain 25217958
nsv1075809 CNV duplication 25765185
nsv160594 CNV deletion 16902084
nsv509635 CNV insertion 20534489
nsv511020 OTHER complex 20534489
nsv827075 CNV loss 20364138
nsv945355 CNV duplication 23825009
nsv952144 CNV duplication 24416366

Additional Variant Information for RNA5S4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNA5S4 Gene

Disorders for RNA5S4 Gene

Additional Disease Information for RNA5S4

No disorders were found for RNA5S4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNA5S4 Gene

Publications for RNA5S4 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for RNA5S4 Gene

Sources for RNA5S4 Gene

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