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Aliases for RNA5-8SP5 Gene

Subcategory (RNA class) for RNA5-8SP5 Gene

rRNA

Aliases for RNA5-8SP5 Gene

  • RNA, 5.8S Ribosomal Pseudogene 5 2 3 5
  • RNA, 5.8S Ribosomal 5 2
  • RN5-8S5 3

External Ids for RNA5-8SP5 Gene

ORGUL Members for RNA5-8SP5 Gene

Previous HGNC Symbols for RNA5-8SP5 Gene

  • RN5-8S5

Previous GeneCards Identifiers for RNA5-8SP5 Gene

  • GC02M133012
  • GC02M133019
  • GC02M133024
  • GC02M132282
  • GC02M132302
  • GC02M132324
  • GC02M132346
  • GC02M132349
  • GC02M132355
  • GC02M132361
  • GC02M132368

Summaries for RNA5-8SP5 Gene

GeneCards Summary for RNA5-8SP5 Gene

RNA5-8SP5 (RNA, 5.8S Ribosomal Pseudogene 5) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5-8SP5 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5_8S: 5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea.

  • 5.8S ribosomal RNA: 5.8S ribosomal RNA (5.8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation [2]. It is also known to form covalent linkage to the p53 tumour suppressor protein [3]. 5.8S rRNA is also found in archaea.

Additional gene information for RNA5-8SP5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5-8SP5 Gene

Genomics for RNA5-8SP5 Gene

GeneHancer (GH) Regulatory Elements for RNA5-8SP5 Gene

Promoters and enhancers for RNA5-8SP5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J132254 Enhancer 0.4 ENCODE dbSUPER 650.7 -1.7 -1738 1.6 GC02M132389 RNA5-8SP5 GC02M132381 ANKRD30BL
GH02J132244 Enhancer 0.2 dbSUPER 0.4 +8.4 8422 0.2 RNA5-8SP5 GC02M132389 ANKRD30BL GC02P132223
GH02J132239 Enhancer 0.2 dbSUPER 0.4 +13.3 13348 0.5 RNA5-8SP5 GC02M132389 ANKRD30BL GC02P132223
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5-8SP5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5-8SP5 Gene

Genomic Locations for RNA5-8SP5 Gene
chr2:132,253,154-132,253,305
(GRCh38/hg38)
Size:
152 bases
Orientation:
Minus strand
chr2:133,010,727-133,010,878
(GRCh37/hg19)
Size:
152 bases
Orientation:
Minus strand

Genomic View for RNA5-8SP5 Gene

Genes around RNA5-8SP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5-8SP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5-8SP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5-8SP5 Gene

ORGUL Member Location for RNA5-8SP5 Gene

ORGUL Member Location for RNA5-8SP5 gene

Proteins for RNA5-8SP5 Gene

Post-translational modifications for RNA5-8SP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5-8SP5 Gene

Domains & Families for RNA5-8SP5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5-8SP5 Gene

Function for RNA5-8SP5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5-8SP5 Gene

Localization for RNA5-8SP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5-8SP5 Gene

Pathways & Interactions for RNA5-8SP5 Gene

SuperPathways for RNA5-8SP5 Gene

No Data Available

Interacting Proteins for RNA5-8SP5 Gene

Gene Ontology (GO) - Biological Process for RNA5-8SP5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5-8SP5 Gene

Drugs & Compounds for RNA5-8SP5 Gene

No Compound Related Data Available

Transcripts for RNA5-8SP5 Gene

mRNA/cDNA for RNA5-8SP5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5-8SP5 Gene

No ASD Table

Relevant External Links for RNA5-8SP5 Gene

GeneLoc Exon Structure for
RNA5-8SP5
ECgene alternative splicing isoforms for
RNA5-8SP5

Expression for RNA5-8SP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5-8SP5 Gene

genes like me logo Genes that share expression patterns with RNA5-8SP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5-8SP5 Gene

Orthologs for RNA5-8SP5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5-8SP5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5_8S_rRNA 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5_8S_rRNA 34
  • 88 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5_8S_rRNA 34
  • 88 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5_8S_rRNA 34 34 34
  • 85 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 5_8S_rRNA 34
  • 72 (a)
OneToMany
chicken
(Gallus gallus)
Aves 5_8S_rRNA 34
  • 87 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii 5_8S_rRNA 34
  • 81 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea 5_8S_rRNA 34
  • 71 (a)
OneToMany
Species where no ortholog for RNA5-8SP5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNA5-8SP5 Gene

ENSEMBL:
Gene Tree for RNA5-8SP5 (if available)
TreeFam:
Gene Tree for RNA5-8SP5 (if available)

Paralogs for RNA5-8SP5 Gene

No data available for Paralogs for RNA5-8SP5 Gene

Variants for RNA5-8SP5 Gene

Additional Variant Information for RNA5-8SP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5-8SP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5-8SP5 Gene

Disorders for RNA5-8SP5 Gene

No disorders were found for RNA5-8SP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5-8SP5 Gene

Publications for RNA5-8SP5 Gene

  1. The European Large Subunit Ribosomal RNA Database. (PMID: 11125083) Wuyts J … De Wachter R (Nucleic acids research 2001) 1
  2. Role of the 5.8S rRNA in ribosome translocation. (PMID: 9108162) Abou Elela S … Nazar RN (Nucleic acids research 1997) 1
  3. Cytoplasmic p53 polypeptide is associated with ribosomes. (PMID: 9154813) Fontoura BM … Carroll RB (Molecular and cellular biology 1997) 1

Products for RNA5-8SP5 Gene

Sources for RNA5-8SP5 Gene

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