Aliases for RNA5-8SP3 Gene

Aliases for RNA5-8SP3 Gene

  • RNA, 5.8S Ribosomal Pseudogene 3 2 3
  • RNA, 5.8S Ribosomal 3 2
  • RN5-8S3 3

External Ids for RNA5-8SP3 Gene

Previous HGNC Symbols for RNA5-8SP3 Gene

  • RN5-8S3

Previous GeneCards Identifiers for RNA5-8SP3 Gene

  • GC09M111756

Summaries for RNA5-8SP3 Gene

GeneCards Summary for RNA5-8SP3 Gene

RNA5-8SP3 (RNA, 5.8S Ribosomal Pseudogene 3) is a Pseudogene.

Additional gene information for RNA5-8SP3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5-8SP3 Gene

Genomics for RNA5-8SP3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5-8SP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J108991 Enhancer 0.5 Ensembl ENCODE 600.7 +1.0 968 1.6 PRDM10 ZXDB LOC105376216 RF00002-005 RNA5-8SP3 CTNNAL1 TMEM245 ABITRAM RF00017-7803
GH09J108994 Enhancer 1 FANTOM5 Ensembl ENCODE 0.7 -3.4 -3432 4 SOX13 ZNF766 GABPA NR2F2 CEBPG ZNF592 SPI1 ZNF584 CREM ETV1 FRRS1L CTNNAL1 ENSG00000199331 MIR32 TMEM245 ELP1 RF00002-005 RNA5-8SP3 LOC105376216 piR-50812
GH09J109000 Enhancer 0.7 Ensembl ENCODE 0.4 -8.9 -8947 1.8 ZIC2 JUND FOS FOSL2 BHLHE40 KDM1A RAD21 TCF7L2 FRRS1L ELP1 CTNNAL1 MIR32 ENSG00000199331 ACTL7A TMEM245 RNA5-8SP3 RF00002-005 LOC105376216
GH09J108999 Enhancer 0.3 Ensembl 0.4 -7.5 -7532 0.2 CEBPG CEBPB FRRS1L ENSG00000199331 MIR32 CTNNAL1 TMEM245 RNA5-8SP3 RF00002-005 LOC105376216 piR-50812 ABITRAM
GH09J109007 Enhancer 0.3 Ensembl 0.4 -15.3 -15332 1.4 IKZF1 ZNF140 ELP1 FRRS1L CTNNAL1 ENSG00000199331 MIR32 ACTL7A piR-50812 RNA5-8SP3 RF00002-005 ABITRAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5-8SP3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5-8SP3 Gene

Genomic Locations for RNA5-8SP3 Gene
chr9:108,992,409-108,992,569
(GRCh38/hg38)
Size:
161 bases
Orientation:
Minus strand
chr9:111,754,689-111,754,849
(GRCh37/hg19)
Size:
161 bases
Orientation:
Minus strand

Genomic View for RNA5-8SP3 Gene

Genes around RNA5-8SP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5-8SP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5-8SP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5-8SP3 Gene

Proteins for RNA5-8SP3 Gene

Post-translational modifications for RNA5-8SP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5-8SP3 Gene

Domains & Families for RNA5-8SP3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5-8SP3 Gene

Function for RNA5-8SP3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5-8SP3 Gene

Localization for RNA5-8SP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5-8SP3 Gene

Pathways & Interactions for RNA5-8SP3 Gene

PathCards logo

SuperPathways for RNA5-8SP3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5-8SP3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5-8SP3 Gene

Drugs & Compounds for RNA5-8SP3 Gene

No Compound Related Data Available

Transcripts for RNA5-8SP3 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5-8SP3 Gene

No ASD Table

Relevant External Links for RNA5-8SP3 Gene

GeneLoc Exon Structure for
RNA5-8SP3

No data available for mRNA/cDNA for RNA5-8SP3 Gene

Expression for RNA5-8SP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5-8SP3 Gene

genes like me logo Genes that share expression patterns with RNA5-8SP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5-8SP3 Gene

Orthologs for RNA5-8SP3 Gene

No data available for Orthologs and Evolution for RNA5-8SP3 Gene

Paralogs for RNA5-8SP3 Gene

No data available for Paralogs for RNA5-8SP3 Gene

Variants for RNA5-8SP3 Gene

Additional Variant Information for RNA5-8SP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5-8SP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5-8SP3 Gene

Disorders for RNA5-8SP3 Gene

No disorders were found for RNA5-8SP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5-8SP3 Gene

Publications for RNA5-8SP3 Gene

No publications were found for RNA5-8SP3 Gene.

No data available for Mastermind for RNA5-8SP3 Gene

Products for RNA5-8SP3 Gene

Sources for RNA5-8SP3 Gene