Aliases for RNA5-8SP2 Gene

Aliases for RNA5-8SP2 Gene

  • RNA, 5.8S Ribosomal Pseudogene 2 2 3 5
  • RNA, 5.8S Ribosomal 2 2
  • RNA5-8SP2 5
  • RN5-8S2 3

External Ids for RNA5-8SP2 Gene

Previous HGNC Symbols for RNA5-8SP2 Gene

  • RN5-8S2

Previous GeneCards Identifiers for RNA5-8SP2 Gene

  • GC16P033968
  • GC16P033972
  • GC16P033976

Summaries for RNA5-8SP2 Gene

GeneCards Summary for RNA5-8SP2 Gene

RNA5-8SP2 (RNA, 5.8S Ribosomal Pseudogene 2) is a Pseudogene.

Additional gene information for RNA5-8SP2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNA5-8SP2 Gene

Genomics for RNA5-8SP2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNA5-8SP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J034160 Enhancer 0.2 ENCODE 250.7 -1.7 -1676 1.6 LOC110262331 KY994055-001 KY994056-002 RF00002-001 RNA5-8SP2 NONHSAG019269.2 lnc-TP53TG3F-19 HSALNG0111051 LINC00273 HSALNG0111049
GH16J034163 Enhancer 0.2 ENCODE 250.7 +0.4 380 0.1 HSALNG0111051 LINC00273 KY994055-001 RF00002-001 RNA5-8SP2 MIR9901 lnc-TP53TG3F-19 HSALNG0111049 lnc-TP53TG3F-20 HSALNG0111041
GH16J034162 Enhancer 0.2 ENCODE 250.7 -0.2 -160 0.9 HSALNG0111051 LINC00273 KY994055-001 RF00002-001 RNA5-8SP2 MIR9901 NONHSAG019269.2 lnc-TP53TG3F-19 HSALNG0111049 lnc-TP53TG3F-20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNA5-8SP2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNA5-8SP2 Gene

Latest Assembly
chr16:34,162,959-34,163,110
(GRCh38/hg38)
Size:
152 bases
Orientation:
Plus strand

Previous Assembly
chr16:33,965,426-33,965,577
(GRCh37/hg19 by Entrez Gene)
Size:
152 bases
Orientation:
Plus strand

chr16:33,965,426-33,965,577
(GRCh37/hg19 by Ensembl)
Size:
152 bases
Orientation:
Plus strand

Genomic View for RNA5-8SP2 Gene

Genes around RNA5-8SP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5-8SP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5-8SP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5-8SP2 Gene

Proteins for RNA5-8SP2 Gene

Post-translational modifications for RNA5-8SP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5-8SP2 Gene

Domains & Families for RNA5-8SP2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNA5-8SP2 Gene

Function for RNA5-8SP2 Gene

Phenotypes From GWAS Catalog for RNA5-8SP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5-8SP2 Gene

Localization for RNA5-8SP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5-8SP2 Gene

Pathways & Interactions for RNA5-8SP2 Gene

PathCards logo

SuperPathways for RNA5-8SP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNA5-8SP2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNA5-8SP2 Gene

Drugs & Compounds for RNA5-8SP2 Gene

No Compound Related Data Available

Transcripts for RNA5-8SP2 Gene

mRNA/cDNA for RNA5-8SP2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5-8SP2 Gene

No ASD Table

Relevant External Links for RNA5-8SP2 Gene

GeneLoc Exon Structure for
RNA5-8SP2

Expression for RNA5-8SP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5-8SP2 Gene

genes like me logo Genes that share expression patterns with RNA5-8SP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5-8SP2 Gene

Orthologs for RNA5-8SP2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5-8SP2 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 5_8S_rRNA 30
  • 94 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia 5_8S_rRNA 30
  • 91 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia 5_8S_rRNA 30
  • 90 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia 5_8S_rRNA 30 30 30
  • 86 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia 5_8S_rRNA 30
  • 73 (a)
OneToMany
Chicken
(Gallus gallus)
Aves 5_8S_rRNA 30
  • 90 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii 5_8S_rRNA 30
  • 85 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea 5_8S_rRNA 30
  • 75 (a)
OneToMany
Species where no ortholog for RNA5-8SP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNA5-8SP2 Gene

ENSEMBL:
Gene Tree for RNA5-8SP2 (if available)
TreeFam:
Gene Tree for RNA5-8SP2 (if available)
Alliance of Genome Resources:
Additional Orthologs for RNA5-8SP2

Paralogs for RNA5-8SP2 Gene

No data available for Paralogs for RNA5-8SP2 Gene

Variants for RNA5-8SP2 Gene

Additional Variant Information for RNA5-8SP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5-8SP2
Leiden Open Variation Database (LOVD)
RNA5-8SP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5-8SP2 Gene

Disorders for RNA5-8SP2 Gene

No disorders were found for RNA5-8SP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5-8SP2 Gene

Publications for RNA5-8SP2 Gene

No publications were found for RNA5-8SP2 Gene.

Products for RNA5-8SP2 Gene

Sources for RNA5-8SP2 Gene