Aliases for RN7SL854P Gene

Aliases for RN7SL854P Gene

  • RNA, 7SL, Cytoplasmic 854, Pseudogene 2 3 5
  • RN7SL854P 5

External Ids for RN7SL854P Gene

Previous GeneCards Identifiers for RN7SL854P Gene

  • GC01M066228

Summaries for RN7SL854P Gene

GeneCards Summary for RN7SL854P Gene

RN7SL854P (RNA, 7SL, Cytoplasmic 854, Pseudogene) is a Pseudogene.

Additional gene information for RN7SL854P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SL854P Gene

Genomics for RN7SL854P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RN7SL854P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J065765 Enhancer 0.3 FANTOM5 0.7 -4.5 -4518 0.4 SPI1 LEPROT LEPR RF00017-238 RN7SL854P lnc-JAK1-10 PDE4B
GH01J065773 Enhancer 0.3 Ensembl 0.4 -12.4 -12378 0.5 TCF7L2 RN7SL854P RF00017-238 lnc-JAK1-10 PDE4B LEPR
GH01J065772 Enhancer 0.3 Ensembl 0.4 -11.5 -11530 0.6 JUN RN7SL854P RF00017-238 lnc-JAK1-10 PDE4B LEPR
GH01J065704 Enhancer 0.4 Ensembl 0.2 +57.2 57151 0.4 ZIC2 SPI1 RCOR1 GATA2 ENSG00000285079 PDE4B RF00017-238 RN7SL854P lnc-JAK1-10 LEPR
GH01J065708 Enhancer 0.2 FANTOM5 0.2 +53.0 53039 0.4 AK4 ENSG00000285079 RF00017-238 RN7SL854P lnc-JAK1-10 PDE4B LEPR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL854P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RN7SL854P Gene

Genomic Locations for RN7SL854P Gene
chr1:65,761,058-65,761,352
(GRCh38/hg38)
Size:
295 bases
Orientation:
Minus strand
chr1:66,226,743-66,227,035
(GRCh37/hg19)
Size:
293 bases
Orientation:
Minus strand

Genomic View for RN7SL854P Gene

Genes around RN7SL854P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL854P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL854P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL854P Gene

Proteins for RN7SL854P Gene

Post-translational modifications for RN7SL854P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL854P Gene

Domains & Families for RN7SL854P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SL854P Gene

Function for RN7SL854P Gene

Phenotypes From GWAS Catalog for RN7SL854P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL854P Gene

Localization for RN7SL854P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL854P Gene

Pathways & Interactions for RN7SL854P Gene

PathCards logo

SuperPathways for RN7SL854P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RN7SL854P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SL854P Gene

Drugs & Compounds for RN7SL854P Gene

No Compound Related Data Available

Transcripts for RN7SL854P Gene

mRNA/cDNA for RN7SL854P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL854P Gene

No ASD Table

Relevant External Links for RN7SL854P Gene

GeneLoc Exon Structure for
RN7SL854P

Expression for RN7SL854P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL854P Gene

genes like me logo Genes that share expression patterns with RN7SL854P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL854P Gene

Orthologs for RN7SL854P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL854P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 31
  • 99 (a)
OneToOne
Species where no ortholog for RN7SL854P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RN7SL854P Gene

ENSEMBL:
Gene Tree for RN7SL854P (if available)
TreeFam:
Gene Tree for RN7SL854P (if available)

Paralogs for RN7SL854P Gene

No data available for Paralogs for RN7SL854P Gene

Variants for RN7SL854P Gene

Additional Variant Information for RN7SL854P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL854P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL854P Gene

Disorders for RN7SL854P Gene

No disorders were found for RN7SL854P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL854P Gene

Publications for RN7SL854P Gene

No publications were found for RN7SL854P Gene.

No data available for Mastermind for RN7SL854P Gene

Products for RN7SL854P Gene

Sources for RN7SL854P Gene