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Aliases for RN7SL842P Gene

Subcategory (RNA class) for RN7SL842P Gene


Aliases for RN7SL842P Gene

  • RNA, 7SL, Cytoplasmic 842, Pseudogene 2 3 5

External Ids for RN7SL842P Gene

ORGUL Members for RN7SL842P Gene

Previous GeneCards Identifiers for RN7SL842P Gene

  • GC19P014700

Summaries for RN7SL842P Gene

GeneCards Summary for RN7SL842P Gene

RN7SL842P (RNA, 7SL, Cytoplasmic 842, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL842P Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

Additional gene information for RN7SL842P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL842P Gene

Genomics for RN7SL842P Gene

GeneHancer (GH) Regulatory Elements for RN7SL842P Gene

Promoters and enhancers for RN7SL842P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014587 Enhancer 0.7 Ensembl dbSUPER 600.7 +0.3 343 3.4 IKZF1 IKZF2 PKNOX1 HDGF FOS TARDBP RN7SL842P CLEC17A C19orf57 ENSG00000269378
GH19J014585 Enhancer 0.9 ENCODE dbSUPER 0.7 -3.1 -3053 0.2 ZNF687 MLLT1 IKZF1 BACH1 IKZF2 TRIM22 DPF2 NR2F1 NBN JUNB RN7SL337P RN7SL842P CLEC17A
GH19J014584 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.7 -3.5 -3456 0.2 MLLT1 RN7SL337P CLEC17A RN7SL842P
GH19J014610 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +26.0 26044 8 ELF3 NKRF CEBPG TRIM24 RELA ZNF548 CREM MLLT1 ZNF384 ZNF644 ADGRE3 ZNF333 AKAP8 CCDC130 BRD4 MRI1 OR7C1 PKN1 ENSG00000256210 PRKACA
GH19J014602 Enhancer 1 ENCODE dbSUPER 0.4 +15.9 15856 2.5 SP1 ZNF687 RELA CREM ZBED1 IKZF1 POLR2A IKZF2 PKNOX1 ZNF24 ENSG00000269378 RN7SL842P CLEC17A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL842P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL842P Gene

Genomic Locations for RN7SL842P Gene
300 bases
Plus strand
297 bases
Plus strand

Genomic View for RN7SL842P Gene

Genes around RN7SL842P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL842P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL842P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL842P Gene

Proteins for RN7SL842P Gene

Post-translational modifications for RN7SL842P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL842P Gene

Domains & Families for RN7SL842P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL842P Gene

Function for RN7SL842P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL842P Gene

Localization for RN7SL842P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL842P Gene

Pathways & Interactions for RN7SL842P Gene

PathCards logo

SuperPathways for RN7SL842P Gene

No Data Available

Interacting Proteins for RN7SL842P Gene

Gene Ontology (GO) - Biological Process for RN7SL842P Gene


No data available for Pathways by source and SIGNOR curated interactions for RN7SL842P Gene

Drugs & Compounds for RN7SL842P Gene

No Compound Related Data Available

Transcripts for RN7SL842P Gene

mRNA/cDNA for RN7SL842P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL842P Gene

No ASD Table

Relevant External Links for RN7SL842P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RN7SL842P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL842P Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL842P Gene

This gene is overexpressed in Whole Blood (x12.2), Spleen (x5.8), and Small Intestine - Terminal Ileum (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of RN7SL842P Gene:

genes like me logo Genes that share expression patterns with RN7SL842P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL842P Gene

Orthologs for RN7SL842P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL842P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 92 (a)
Species where no ortholog for RN7SL842P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL842P Gene

Gene Tree for RN7SL842P (if available)
Gene Tree for RN7SL842P (if available)

Paralogs for RN7SL842P Gene

No data available for Paralogs for RN7SL842P Gene

Variants for RN7SL842P Gene

Additional Variant Information for RN7SL842P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL842P Gene

Disorders for RN7SL842P Gene

No disorders were found for RN7SL842P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL842P Gene

Publications for RN7SL842P Gene

No publications were found for RN7SL842P Gene.

No data available for External Links for RN7SL842P Gene

Products for RN7SL842P Gene

Sources for RN7SL842P Gene

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