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Aliases for RN7SL809P Gene

Subcategory (RNA class) for RN7SL809P Gene

lncRNA

Aliases for RN7SL809P Gene

  • RNA, 7SL, Cytoplasmic 809, Pseudogene 2 3 5

External Ids for RN7SL809P Gene

ORGUL Members for RN7SL809P Gene

Previous GeneCards Identifiers for RN7SL809P Gene

  • GC12M057065

Summaries for RN7SL809P Gene

GeneCards Summary for RN7SL809P Gene

RN7SL809P (RNA, 7SL, Cytoplasmic 809, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SL809P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL809P Gene

Genomics for RN7SL809P Gene

GeneHancer (GH) Regulatory Elements for RN7SL809P Gene

Promoters and enhancers for RN7SL809P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J057109 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 76.1 -440.3 -440327 4.1 HDGF ZNF473 MTA3 ZNF652 ZFX ELF3 SP1 CC2D1A CTCF ZNF148 STAT6 NEMP1 EEF1AKMT3 ENSG00000257740 BAZ2A PAN2 SMARCC2 CDK4 ANKRD52 DTX3
GH12J056040 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 66.2 +628.7 628747 3.3 MTA3 SP1 ELF3 ZFX CTCF ZKSCAN8 MNT SIX5 ZNF148 NKRF RPS26 ENSG00000257449 LOC105369780 BAZ2A RN7SL809P CDK2 ZC3H10 STAT2 RNU6-343P PAN2
GH12J056220 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 59.9 +447.9 447890 5.7 HDGF ZNF652 SP1 CC2D1A ZFX CTCF ELF3 MNT NKRF POLR2A NABP2 RNF41 NEMP1 BAZ2A PAN2 DNAJC14 ZBTB39 TMEM198B PHC1P1 ANKRD52
GH12J056298 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 42.7 +370.0 369993 4.7 ZFX SP1 CC2D1A CTCF ZKSCAN8 MNT CBFA2T2 NKRF MLLT1 ZNF121 ENSG00000257303 IL23A CS BAZ2A ZC3H10 NEMP1 RN7SL809P CDK2 DNAJC14 RPL41
GH12J055925 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 36.1 +737.4 737408 16.2 HDGF SP1 ZFX ZNF652 CC2D1A ELF3 CTCF ZNF148 NKRF POLR2A PYM1 DGKA BAZ2A RN7SL809P TMEM198B DNAJC14 CDK2 RNU6-343P ZC3H10 MMP19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL809P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL809P Gene

Genomic Locations for RN7SL809P Gene
chr12:56,670,450-56,670,746
(GRCh38/hg38)
Size:
297 bases
Orientation:
Minus strand
chr12:57,064,236-57,064,530
(GRCh37/hg19)
Size:
295 bases
Orientation:
Minus strand

Genomic View for RN7SL809P Gene

Genes around RN7SL809P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL809P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL809P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL809P Gene

Proteins for RN7SL809P Gene

Post-translational modifications for RN7SL809P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL809P Gene

Domains & Families for RN7SL809P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL809P Gene

Function for RN7SL809P Gene

Phenotypes From GWAS Catalog for RN7SL809P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL809P Gene

Localization for RN7SL809P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL809P Gene

Pathways & Interactions for RN7SL809P Gene

PathCards logo

SuperPathways for RN7SL809P Gene

No Data Available

Interacting Proteins for RN7SL809P Gene

Gene Ontology (GO) - Biological Process for RN7SL809P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL809P Gene

Drugs & Compounds for RN7SL809P Gene

No Compound Related Data Available

Transcripts for RN7SL809P Gene

mRNA/cDNA for RN7SL809P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL809P Gene

No ASD Table

Relevant External Links for RN7SL809P Gene

GeneLoc Exon Structure for
RN7SL809P
ECgene alternative splicing isoforms for
RN7SL809P

Expression for RN7SL809P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL809P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL809P Gene:

RN7SL809P
genes like me logo Genes that share expression patterns with RN7SL809P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL809P Gene

Orthologs for RN7SL809P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL809P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 97 (a)
OneToOne
Species where no ortholog for RN7SL809P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL809P Gene

ENSEMBL:
Gene Tree for RN7SL809P (if available)
TreeFam:
Gene Tree for RN7SL809P (if available)

Paralogs for RN7SL809P Gene

No data available for Paralogs for RN7SL809P Gene

Variants for RN7SL809P Gene

Additional Variant Information for RN7SL809P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL809P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL809P Gene

Disorders for RN7SL809P Gene

No disorders were found for RN7SL809P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL809P Gene

Publications for RN7SL809P Gene

No publications were found for RN7SL809P Gene.

No data available for External Links for RN7SL809P Gene

Products for RN7SL809P Gene

Sources for RN7SL809P Gene

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