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Aliases for RN7SL728P Gene

Subcategory (RNA class) for RN7SL728P Gene


Aliases for RN7SL728P Gene

  • RNA, 7SL, Cytoplasmic 728, Pseudogene 2 3 5

External Ids for RN7SL728P Gene

ORGUL Members for RN7SL728P Gene

Previous GeneCards Identifiers for RN7SL728P Gene

  • GC04M103270

Summaries for RN7SL728P Gene

GeneCards Summary for RN7SL728P Gene

RN7SL728P (RNA, 7SL, Cytoplasmic 728, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL728P Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

Additional gene information for RN7SL728P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL728P Gene

Genomics for RN7SL728P Gene

GeneHancer (GH) Regulatory Elements for RN7SL728P Gene

Promoters and enhancers for RN7SL728P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I102343 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.8 +3.9 3946 3.4 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 SLC39A8 SLC9B1 UBE2D3 NFKB1 RN7SL728P GC04M102262
GH04I102342 Enhancer 0.8 ENCODE 0.4 +5.8 5802 0.2 HDAC1 TCF12 ZNF766 GATA2 CREM NCOA1 USF2 ZEB2 KLF16 SMARCA4 SLC39A8 RN7SL728P GC04M102262
GH04I102429 Promoter/Enhancer 1.4 Ensembl ENCODE 0.2 -81.9 -81887 3.2 PKNOX1 ATF1 FOXA2 ARID4B SIN3A YY1 NCOA2 E2F8 ARID2 ZNF143 SLC39A8 BDH2 ENSG00000248161 LOC105377621 RN7SL728P
GH04I102390 Enhancer 0.9 Ensembl ENCODE 0.3 -41.7 -41710 0.8 CTCF BACH1 ZNF140 BMI1 BATF POLR2A ATF7 RUNX3 IKZF2 NR2F1 RN7SL728P SLC39A8
GH04I102321 Enhancer 0.6 ENCODE 0.3 +26.8 26830 1 RB1 EBF1 DPF2 ATF2 BCL11A POLR2A IKZF1 NBN ATF7 MLLT1 SLC39A8 RN7SL728P GC04M102262
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SL728P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL728P Gene

Genomic Locations for RN7SL728P Gene
300 bases
Minus strand

Genomic View for RN7SL728P Gene

Genes around RN7SL728P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL728P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL728P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL728P Gene

Proteins for RN7SL728P Gene

Post-translational modifications for RN7SL728P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL728P Gene

Domains & Families for RN7SL728P Gene

Gene Families for RN7SL728P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL728P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL728P Gene

Function for RN7SL728P Gene

Phenotypes From GWAS Catalog for RN7SL728P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL728P Gene

Localization for RN7SL728P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL728P Gene

Pathways & Interactions for RN7SL728P Gene

SuperPathways for RN7SL728P Gene

No Data Available

Interacting Proteins for RN7SL728P Gene

Gene Ontology (GO) - Biological Process for RN7SL728P Gene


No data available for Pathways by source and SIGNOR curated interactions for RN7SL728P Gene

Drugs & Compounds for RN7SL728P Gene

No Compound Related Data Available

Transcripts for RN7SL728P Gene

mRNA/cDNA for RN7SL728P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL728P Gene

No ASD Table

Relevant External Links for RN7SL728P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RN7SL728P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL728P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL728P Gene:

genes like me logo Genes that share expression patterns with RN7SL728P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL728P Gene

Orthologs for RN7SL728P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SL728P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia Metazoa_SRP 34
  • 98 (a)
(Danio rerio)
Actinopterygii Metazoa_SRP 34
  • 71 (a)
Species where no ortholog for RN7SL728P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SL728P Gene

Gene Tree for RN7SL728P (if available)
Gene Tree for RN7SL728P (if available)

Paralogs for RN7SL728P Gene

No data available for Paralogs for RN7SL728P Gene

Variants for RN7SL728P Gene

Additional Variant Information for RN7SL728P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL728P Gene

Disorders for RN7SL728P Gene

No disorders were found for RN7SL728P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL728P Gene

Publications for RN7SL728P Gene

No publications were found for RN7SL728P Gene.

Products for RN7SL728P Gene

Sources for RN7SL728P Gene

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