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Aliases for RN7SL619P Gene

Subcategory (RNA class) for RN7SL619P Gene

SRP

Aliases for RN7SL619P Gene

  • RNA, 7SL, Cytoplasmic 619, Pseudogene 2 3 5

External Ids for RN7SL619P Gene

ORGUL Members for RN7SL619P Gene

Previous GeneCards Identifiers for RN7SL619P Gene

  • GC19M013927
  • GC19M013863
  • GC19M013868
  • GC19M013936
  • GC19M013873
  • GC19M013879
  • GC19M013889
  • GC19M013897
  • GC19M013907
  • GC19M013914
  • GC19M013921
  • GC19M013922

Summaries for RN7SL619P Gene

GeneCards Summary for RN7SL619P Gene

RN7SL619P (RNA, 7SL, Cytoplasmic 619, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL619P Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

Additional gene information for RN7SL619P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL619P Gene

Genomics for RN7SL619P Gene

GeneHancer (GH) Regulatory Elements for RN7SL619P Gene

Promoters and enhancers for RN7SL619P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J013813 Enhancer 0.4 Ensembl 600.7 +0.8 818 1.4 ZFHX2 EGR2 RN7SL619P ZSWIM4 ENSG00000267582
GH19J013815 Enhancer 0.2 Ensembl 600.7 -0.7 -682 0.8 RN7SL619P GC19M013963 ZSWIM4
GH19J013816 Promoter/Enhancer 1.3 Ensembl ENCODE 0.7 -2.5 -2465 2 ZFX SP1 POLR2A GMEB1 NRF1 ZNF600 GTF2F1 KLF9 SP2 NKRF ASF1B RN7SL619P GC19M013963 ZSWIM4
GH19J013825 Enhancer 0.9 Ensembl ENCODE 0.4 -10.7 -10720 1.5 SP1 IKZF1 LARP7 PKNOX1 KLF9 SP2 ZNF266 ZBTB17 KLF8 NRF1 CCDC130 DCAF15 MRI1 ZNF333 DDX39A TRMT1 RFX1 GC19M013963 RN7SL619P ENSG00000267519
GH19J013802 Enhancer 0.7 Ensembl 0.4 +11.9 11923 1.3 CC2D1A CBFA2T2 ZNF121 TRIM24 EGR1 SMARCA4 DPF2 LEF1 TCF12 OSR2 ENSG00000267582 ZSWIM4 RN7SL619P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL619P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL619P Gene

Genomic Locations for RN7SL619P Gene
chr19:13,815,062-13,815,319
(GRCh38/hg38)
Size:
258 bases
Orientation:
Minus strand
chr19:13,925,880-13,926,133
(GRCh37/hg19)
Size:
254 bases
Orientation:
Minus strand

Genomic View for RN7SL619P Gene

Genes around RN7SL619P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL619P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL619P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL619P Gene

Proteins for RN7SL619P Gene

Post-translational modifications for RN7SL619P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL619P Gene

Domains & Families for RN7SL619P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL619P Gene

Function for RN7SL619P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL619P Gene

Localization for RN7SL619P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL619P Gene

Pathways & Interactions for RN7SL619P Gene

PathCards logo

SuperPathways for RN7SL619P Gene

No Data Available

Interacting Proteins for RN7SL619P Gene

Gene Ontology (GO) - Biological Process for RN7SL619P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL619P Gene

Drugs & Compounds for RN7SL619P Gene

No Compound Related Data Available

Transcripts for RN7SL619P Gene

mRNA/cDNA for RN7SL619P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL619P Gene

No ASD Table

Relevant External Links for RN7SL619P Gene

GeneLoc Exon Structure for
RN7SL619P
ECgene alternative splicing isoforms for
RN7SL619P

Expression for RN7SL619P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL619P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL619P Gene:

RN7SL619P
genes like me logo Genes that share expression patterns with RN7SL619P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL619P Gene

Orthologs for RN7SL619P Gene

Evolution for RN7SL619P Gene

ENSEMBL:
Gene Tree for RN7SL619P (if available)
TreeFam:
Gene Tree for RN7SL619P (if available)

No data available for Orthologs for RN7SL619P Gene

Paralogs for RN7SL619P Gene

No data available for Paralogs for RN7SL619P Gene

Variants for RN7SL619P Gene

Additional Variant Information for RN7SL619P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL619P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL619P Gene

Disorders for RN7SL619P Gene

No disorders were found for RN7SL619P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL619P Gene

Publications for RN7SL619P Gene

No publications were found for RN7SL619P Gene.

Products for RN7SL619P Gene

Sources for RN7SL619P Gene

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