Free for academic non-profit institutions. Other users need a Commercial license

RN7SL573P Gene(Pseudogene)

RNA, 7SL, Cytoplasmic 573, Pseudogene

GCID:
GC17P075041
GIFtS:
13
Genes Participants
UDN Logo

Aliases for RN7SL573P Gene

Subcategory (RNA class) for RN7SL573P Gene

SRP

Aliases for RN7SL573P Gene

  • RNA, 7SL, Cytoplasmic 573, Pseudogene 2 3 5

External Ids for RN7SL573P Gene

ORGUL Members for RN7SL573P Gene

Previous GeneCards Identifiers for RN7SL573P Gene

  • GC17P073042
  • GC17P073052

Summaries for RN7SL573P Gene

GeneCards Summary for RN7SL573P Gene

RN7SL573P (RNA, 7SL, Cytoplasmic 573, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL573P Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

Additional gene information for RN7SL573P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL573P Gene

Genomics for RN7SL573P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RN7SL573P Gene

Promoters and enhancers for RN7SL573P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17I074511 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 50.6 -528.1 -528136 3.3 YBX1 FEZF1 ZNF213 ZNF416 ZNF548 SP3 ZFP41 MEF2D ZNF610 GLIS1 NUP85 NAT9 NT5C GGA3 RN7SL573P HID1-AS1 CD300E SLC16A5 MIF4GD CDR2L
GH17I075031 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 31 -7.1 -7119 5.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 ZNF143 GC17P075034 GC17P075036 GC17M075035 TRR-TCG3-1 TRR-CCT2-1 TRR-CCT1-1 NUP85 UNK NT5C GGA3
GH17I075085 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.6 +49.8 49756 11.9 CLOCK MLX ZFP64 YBX1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 SP3 SLC16A5 GC17M075090 ENSG00000206713 NUP85 UNK NT5C ENSG00000266980 ENSG00000267342 GGA3 NAT9
GH17I075903 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 29.7 +863.5 863513 2.6 MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF213 ZNF416 ZNF143 MRPL38 FBF1 RN7SL573P UNK TRIM65 SRSF2 ENSG00000267801 NUP85 ENSG00000267342 RHBDF2
GH17I074203 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 23.2 -836.6 -836589 4.3 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GC17P074206 RPL38 NAT9 NT5C RN7SL573P KCTD2 SUMO2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SL573P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL573P Gene

Genomic Locations for RN7SL573P Gene
chr17:75,041,740-75,042,015
(GRCh38/hg38)
Size:
276 bases
Orientation:
Plus strand
chr17:73,037,830-73,038,102
(GRCh37/hg19)

Genomic View for RN7SL573P Gene

Genes around RN7SL573P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL573P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL573P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RN7SL573P Gene

Proteins for RN7SL573P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RN7SL573P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL573P Gene

Domains & Families for RN7SL573P Gene

Gene Families for RN7SL573P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL573P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL573P Gene

Function for RN7SL573P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RN7SL573P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL573P Gene

Localization for RN7SL573P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL573P Gene

Pathways & Interactions for RN7SL573P Gene

SuperPathways for RN7SL573P Gene

PathCards logo More details on SuperPathways for RN7SL573P
No Data Available

Interacting Proteins for RN7SL573P Gene

Gene Ontology (GO) - Biological Process for RN7SL573P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL573P Gene

Drugs & Compounds for RN7SL573P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RN7SL573P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RN7SL573P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL573P Gene

No ASD Table

Relevant External Links for RN7SL573P Gene

GeneLoc Exon Structure for
RN7SL573P
ECgene alternative splicing isoforms for
RN7SL573P

Expression for RN7SL573P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL573P Gene

mRNA expression in normal human tissues for RN7SL573P Gene
mRNA expression by GTEx for RN7SL573P Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL573P Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.8) and Brain - Cerebellum (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of RN7SL573P Gene:

RN7SL573P
genes like me logo Genes that share expression patterns with RN7SL573P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL573P Gene

Orthologs for RN7SL573P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL573P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia Metazoa_SRP 34
  • 81 (a)
 OneToOne
Species where no ortholog for RN7SL573P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL573P Gene

ENSEMBL:
Gene Tree for RN7SL573P (if available)
TreeFam:
Gene Tree for RN7SL573P (if available)

Paralogs for RN7SL573P Gene

No data available for Paralogs for RN7SL573P Gene

Variants for RN7SL573P Gene

Additional Variant Information for RN7SL573P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL573P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL573P Gene

Disorders for RN7SL573P Gene

No disorders were found for RN7SL573P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL573P Gene

Publications for RN7SL573P Gene

No publications were found for RN7SL573P Gene.

Products for RN7SL573P Gene

Sources for RN7SL573P Gene

Content
Loading form....