Aliases for RN7SL566P Gene

Aliases for RN7SL566P Gene

  • RNA, 7SL, Cytoplasmic 566, Pseudogene 2 3 5

External Ids for RN7SL566P Gene

Previous GeneCards Identifiers for RN7SL566P Gene

  • GC19P039865

Summaries for RN7SL566P Gene

GeneCards Summary for RN7SL566P Gene

RN7SL566P (RNA, 7SL, Cytoplasmic 566, Pseudogene) is a Pseudogene.

Additional gene information for RN7SL566P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SL566P Gene

Genomics for RN7SL566P Gene

GeneHancer (GH) Regulatory Elements for RN7SL566P Gene

Promoters and enhancers for RN7SL566P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J039397 Promoter/Enhancer 3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 59.1 +37.9 37922 20 RXRA EP300 FOXK2 HNRNPK ZBTB40 ZNF217 CTCF ZSCAN5C SIN3A NRF1 ZFP36 PAF1 5EW4_A-031 MG828566 HNRNPL ZNF780B FBL SUPT5H RPS16 EID2B
GH19J039368 Enhancer 0.3 Ensembl dbSUPER 500.7 -0.5 -452 1 RF00017-2979 RN7SL566P lnc-LRFN1-2 lnc-MED29-1 MED29 PAF1 RPS16 SUPT5H TIMM50 EID2B
GH19J039370 Enhancer 0.3 dbSUPER 500.7 +2.0 1971 0.6 ESRRA RF00017-2979 RN7SL566P lnc-MED29-1 MED29 PAF1 RPS16 SUPT5H TIMM50 EID2B SAMD4B
GH19J038647 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 48.9 -709.4 -709361 25.6 EP300 ZNF217 ZSCAN5C SIN3A TCF12 NRF1 MYC POLR2G SP1 NCOR1 ACTN4 HNRNPL ZFP30 ZNF781 ZNF607 ENSG00000267152 ZNF573 RN7SL566P SUPT5H ENSG00000269688
GH19J039831 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 31.2 +464.3 464297 3.6 HNRNPK ZBTB40 ZNF217 EP300 SIN3A TCF12 NRF1 MYC ZNF300 USF1 DYRK1B HNRNPL FBL SNRPA COQ8B ZNF780B RN7SL566P ZNF780A AKT2 ENSG00000269688
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL566P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL566P Gene

Genomic Locations for RN7SL566P Gene
chr19:39,369,153-39,369,448
(GRCh38/hg38)
Size:
296 bases
Orientation:
Plus strand
chr19:39,859,793-39,860,086
(GRCh37/hg19)
Size:
294 bases
Orientation:
Plus strand

Genomic View for RN7SL566P Gene

Genes around RN7SL566P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL566P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL566P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL566P Gene

Proteins for RN7SL566P Gene

Post-translational modifications for RN7SL566P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL566P Gene

Domains & Families for RN7SL566P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SL566P Gene

Function for RN7SL566P Gene

Phenotypes From GWAS Catalog for RN7SL566P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL566P Gene

Localization for RN7SL566P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL566P Gene

Pathways & Interactions for RN7SL566P Gene

PathCards logo

SuperPathways for RN7SL566P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RN7SL566P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SL566P Gene

Drugs & Compounds for RN7SL566P Gene

No Compound Related Data Available

Transcripts for RN7SL566P Gene

mRNA/cDNA for RN7SL566P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL566P Gene

No ASD Table

Relevant External Links for RN7SL566P Gene

GeneLoc Exon Structure for
RN7SL566P

Expression for RN7SL566P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL566P Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL566P Gene

This gene is overexpressed in Whole Blood (x4.7).
genes like me logo Genes that share expression patterns with RN7SL566P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL566P Gene

Orthologs for RN7SL566P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL566P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 31
  • 99 (a)
OneToOne
Species where no ortholog for RN7SL566P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL566P Gene

ENSEMBL:
Gene Tree for RN7SL566P (if available)
TreeFam:
Gene Tree for RN7SL566P (if available)

Paralogs for RN7SL566P Gene

No data available for Paralogs for RN7SL566P Gene

Variants for RN7SL566P Gene

Additional Variant Information for RN7SL566P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL566P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL566P Gene

Disorders for RN7SL566P Gene

No disorders were found for RN7SL566P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL566P Gene

Publications for RN7SL566P Gene

No publications were found for RN7SL566P Gene.

No data available for Mastermind for RN7SL566P Gene

Products for RN7SL566P Gene

Sources for RN7SL566P Gene