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Aliases for RN7SL561P Gene

Subcategory (RNA class) for RN7SL561P Gene


Aliases for RN7SL561P Gene

  • RNA, 7SL, Cytoplasmic 561, Pseudogene 2 3 5

External Ids for RN7SL561P Gene

ORGUL Members for RN7SL561P Gene

Summaries for RN7SL561P Gene

GeneCards Summary for RN7SL561P Gene

RN7SL561P (RNA, 7SL, Cytoplasmic 561, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL561P Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

Additional gene information for RN7SL561P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL561P Gene

Genomics for RN7SL561P Gene

GeneHancer (GH) Regulatory Elements for RN7SL561P Gene

Promoters and enhancers for RN7SL561P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I001663 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -1.1 -1082 2.8 ZNF687 ZNF189 CBFB MAX EBF1 MNT ELF1 DPF2 ATF2 SP1 RN7SL561P ENSG00000271523 SIRPB1 SIRPG SIRPG-AS1 SIRPB3P
GH20I001667 Enhancer 0.2 dbSUPER 550.8 +1.3 1349 0.4 RN7SL561P ENSG00000271523 ENSG00000236550 SIRPG SIRPB3P
GH20I001656 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 0.4 -8.9 -8908 1.9 IKZF1 MAFK RUNX3 SPI1 SIRPG ENSG00000271523 RN7SL561P SIRPG-AS1
GH20I001661 Enhancer 0.5 dbSUPER 0.8 -4.4 -4438 1.1 FOXA2 NR2F1 IKZF1 IKZF2 RUNX3 SPI1 ENSG00000271523 RN7SL561P SIRPG SIRPG-AS1
GH20I001668 Enhancer 0.4 dbSUPER 0.8 +3.7 3682 3.2 POLR2A DPF2 ZIC2 ENSG00000271523 SIRPB1 RN7SL561P ENSG00000236550 SIRPG SIRPB3P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SL561P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL561P Gene

Genomic Locations for RN7SL561P Gene
281 bases
Plus strand

Genomic View for RN7SL561P Gene

Genes around RN7SL561P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL561P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL561P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL561P Gene

Proteins for RN7SL561P Gene

Post-translational modifications for RN7SL561P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL561P Gene

Domains & Families for RN7SL561P Gene

Gene Families for RN7SL561P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL561P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL561P Gene

Function for RN7SL561P Gene

Phenotypes From GWAS Catalog for RN7SL561P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL561P Gene

Localization for RN7SL561P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL561P Gene

Pathways & Interactions for RN7SL561P Gene

SuperPathways for RN7SL561P Gene

No Data Available

Interacting Proteins for RN7SL561P Gene

Gene Ontology (GO) - Biological Process for RN7SL561P Gene


No data available for Pathways by source and SIGNOR curated interactions for RN7SL561P Gene

Drugs & Compounds for RN7SL561P Gene

No Compound Related Data Available

Transcripts for RN7SL561P Gene

mRNA/cDNA for RN7SL561P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL561P Gene

No ASD Table

Relevant External Links for RN7SL561P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RN7SL561P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL561P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL561P Gene:

genes like me logo Genes that share expression patterns with RN7SL561P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL561P Gene

Orthologs for RN7SL561P Gene

Evolution for RN7SL561P Gene

Gene Tree for RN7SL561P (if available)
Gene Tree for RN7SL561P (if available)

No data available for Orthologs for RN7SL561P Gene

Paralogs for RN7SL561P Gene

No data available for Paralogs for RN7SL561P Gene

Variants for RN7SL561P Gene

Additional Variant Information for RN7SL561P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL561P Gene

Disorders for RN7SL561P Gene

No disorders were found for RN7SL561P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL561P Gene

Publications for RN7SL561P Gene

No publications were found for RN7SL561P Gene.

Products for RN7SL561P Gene

Sources for RN7SL561P Gene

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