Aliases for RN7SL559P Gene

Aliases for RN7SL559P Gene

  • RNA, 7SL, Cytoplasmic 559, Pseudogene 2 3 5
  • RN7SL559P 5

External Ids for RN7SL559P Gene

Previous GeneCards Identifiers for RN7SL559P Gene

  • GC01M028360

Summaries for RN7SL559P Gene

GeneCards Summary for RN7SL559P Gene

RN7SL559P (RNA, 7SL, Cytoplasmic 559, Pseudogene) is a Pseudogene.

Additional gene information for RN7SL559P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SL559P Gene

Genomics for RN7SL559P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RN7SL559P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028032 Enhancer 0.2 Ensembl 600.7 -0.1 -121 0.2 RF00017-130 RN7SL559P lnc-PTAFR-3 lnc-RPA2-1 EYA3 PTAFR RNU6-1245P SCARNA1 PPP1R8 lnc-PTAFR-10
GH01J028031 Enhancer 0.2 Ensembl 600.7 +0.7 679 0.2 RF00017-130 RN7SL559P lnc-PTAFR-3 lnc-RPA2-1 EYA3 PTAFR RNU6-1245P SCARNA1 PPP1R8 XKR8
GH01J028055 Enhancer 1.1 Ensembl ENCODE 0.3 -26.3 -26321 6.2 PRDM10 LEF1 BACH1 PRDM1 PKNOX1 IKZF2 ZNF24 TRIM22 DPF2 ZNF600 EYA3 PTAFR GMEB1 RNU6-176P RNU7-29P ACTG1P20 YTHDF2 SCARNA1 PPP1R8 RNU6-1245P
GH01J028046 Enhancer 0.4 Ensembl 0.4 -13.8 -13821 2 IKZF1 TSC22D4 JUN FOXK2 EYA3 DNAJC8 ATP5IF1 PPP1R8 SCARNA1 RNU6-1245P RN7SL559P RF00017-130 lnc-PTAFR-3 lnc-PTAFR-10
GH01J028062 Enhancer 0.6 ENCODE 0.3 -31.0 -30962 1 LEF1 PKNOX1 TCF7L2 PRDM4 ADNP JUN ID3 ZBTB33 MEIS2 ZNF384 lnc-PTAFR-10 EYA3 RNU6-176P RNU7-29P lnc-PTAFR-3 RF00017-130 RN7SL559P XKR8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL559P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RN7SL559P Gene

Genomic Locations for RN7SL559P Gene
chr1:28,031,884-28,032,180
(GRCh38/hg38)
Size:
297 bases
Orientation:
Minus strand
chr1:28,358,397-28,358,691
(GRCh37/hg19)
Size:
295 bases
Orientation:
Minus strand

Genomic View for RN7SL559P Gene

Genes around RN7SL559P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL559P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL559P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL559P Gene

Proteins for RN7SL559P Gene

Post-translational modifications for RN7SL559P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL559P Gene

Domains & Families for RN7SL559P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SL559P Gene

Function for RN7SL559P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL559P Gene

Localization for RN7SL559P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL559P Gene

Pathways & Interactions for RN7SL559P Gene

PathCards logo

SuperPathways for RN7SL559P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RN7SL559P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SL559P Gene

Drugs & Compounds for RN7SL559P Gene

No Compound Related Data Available

Transcripts for RN7SL559P Gene

mRNA/cDNA for RN7SL559P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL559P Gene

No ASD Table

Relevant External Links for RN7SL559P Gene

GeneLoc Exon Structure for
RN7SL559P

Expression for RN7SL559P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL559P Gene

genes like me logo Genes that share expression patterns with RN7SL559P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL559P Gene

Orthologs for RN7SL559P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL559P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 31
  • 99 (a)
OneToOne
Species where no ortholog for RN7SL559P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RN7SL559P Gene

ENSEMBL:
Gene Tree for RN7SL559P (if available)
TreeFam:
Gene Tree for RN7SL559P (if available)

Paralogs for RN7SL559P Gene

No data available for Paralogs for RN7SL559P Gene

Variants for RN7SL559P Gene

Additional Variant Information for RN7SL559P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL559P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL559P Gene

Disorders for RN7SL559P Gene

Additional Disease Information for RN7SL559P

No disorders were found for RN7SL559P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RN7SL559P Gene

Publications for RN7SL559P Gene

No publications were found for RN7SL559P Gene.

No data available for Mastermind for RN7SL559P Gene

Products for RN7SL559P Gene

Sources for RN7SL559P Gene