Aliases for RN7SL557P Gene

Aliases for RN7SL557P Gene

  • RNA, 7SL, Cytoplasmic 557, Pseudogene 2 3 5

External Ids for RN7SL557P Gene

Previous GeneCards Identifiers for RN7SL557P Gene

  • GC16P025385
  • GC16P025472

Summaries for RN7SL557P Gene

GeneCards Summary for RN7SL557P Gene

RN7SL557P (RNA, 7SL, Cytoplasmic 557, Pseudogene) is a Pseudogene.

Additional gene information for RN7SL557P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SL557P Gene

Genomics for RN7SL557P Gene

GeneHancer (GH) Regulatory Elements for RN7SL557P Gene

Promoters and enhancers for RN7SL557P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J025187 Enhancer 0.4 Ensembl 750.6 -1.8 -1763 0.2 MAFK ZNF639 NFE2 FOS RN7SL557P LCMT1 AQP8
GH16J025186 Enhancer 0.3 Ensembl 750.6 -1.2 -1163 0.2 KDM1A RN7SL557P lnc-LCMT1-2 LCMT1 AQP8
GH16J025205 Enhancer 0.8 Ensembl ENCODE 0.3 -20.8 -20838 1.4 NR2F6 CREB1 HLF ELF3 TFE3 CEBPG ZNF384 CEBPA RXRB RCOR2 AQP8 RN7SL557P
GH16J025208 Enhancer 0.8 Ensembl ENCODE 0.3 -24.5 -24463 4.8 SMARCA4 EGR1 PHF21A PKNOX1 ZNF316 MAFG MAFK FOSL1 DPF2 NFE2 AQP8 RN7SL557P
GH16J025200 Enhancer 0.3 Ensembl 0.4 -15.5 -15463 0.4 CEBPB ZNF146 LCMT1 AQP8 RN7SL557P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL557P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL557P Gene

Genomic Locations for RN7SL557P Gene
chr16:25,185,253-25,185,538
(GRCh38/hg38)
Size:
286 bases
Orientation:
Minus strand
chr16:25,196,528-25,196,808
(GRCh37/hg19)
Size:
281 bases
Orientation:
Plus strand

Genomic View for RN7SL557P Gene

Genes around RN7SL557P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL557P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL557P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL557P Gene

Proteins for RN7SL557P Gene

Post-translational modifications for RN7SL557P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL557P Gene

Domains & Families for RN7SL557P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SL557P Gene

Function for RN7SL557P Gene

Phenotypes From GWAS Catalog for RN7SL557P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL557P Gene

Localization for RN7SL557P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL557P Gene

Pathways & Interactions for RN7SL557P Gene

PathCards logo

SuperPathways for RN7SL557P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RN7SL557P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL557P Gene

Drugs & Compounds for RN7SL557P Gene

No Compound Related Data Available

Transcripts for RN7SL557P Gene

mRNA/cDNA for RN7SL557P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL557P Gene

No ASD Table

Relevant External Links for RN7SL557P Gene

GeneLoc Exon Structure for
RN7SL557P
ECgene alternative splicing isoforms for
RN7SL557P

Expression for RN7SL557P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL557P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL557P Gene:

RN7SL557P
genes like me logo Genes that share expression patterns with RN7SL557P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL557P Gene

Orthologs for RN7SL557P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL557P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 33
  • 66 (a)
OneToOne
Species where no ortholog for RN7SL557P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL557P Gene

ENSEMBL:
Gene Tree for RN7SL557P (if available)
TreeFam:
Gene Tree for RN7SL557P (if available)

Paralogs for RN7SL557P Gene

No data available for Paralogs for RN7SL557P Gene

Variants for RN7SL557P Gene

Additional Variant Information for RN7SL557P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL557P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL557P Gene

Disorders for RN7SL557P Gene

No disorders were found for RN7SL557P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL557P Gene

Publications for RN7SL557P Gene

No publications were found for RN7SL557P Gene.

No data available for External Links for RN7SL557P Gene

Products for RN7SL557P Gene

Sources for RN7SL557P Gene