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Aliases for RN7SL499P Gene

Subcategory (RNA class) for RN7SL499P Gene

lncRNA

Aliases for RN7SL499P Gene

  • RNA, 7SL, Cytoplasmic 499, Pseudogene 2 3 5

External Ids for RN7SL499P Gene

ORGUL Members for RN7SL499P Gene

Previous GeneCards Identifiers for RN7SL499P Gene

  • GC02M232511

Summaries for RN7SL499P Gene

GeneCards Summary for RN7SL499P Gene

RN7SL499P (RNA, 7SL, Cytoplasmic 499, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SL499P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL499P Gene

Genomics for RN7SL499P Gene

GeneHancer (GH) Regulatory Elements for RN7SL499P Gene

Promoters and enhancers for RN7SL499P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J231645 Enhancer 0.7 ENCODE dbSUPER 600.7 -0.5 -492 1.7 RFX1 CEBPB EP300 STAT1 SREBF1 RN7SL499P GC02M231678
GH02J231639 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.8 3798 6.3 ZNF384 ZNF687 NCOA3 RELA IKZF1 ZBTB33 RFX1 IKZF2 LARP7 SP1 RNU2-22P LINC00471 RN7SL499P LOC105373928
GH02J231660 Enhancer 2 VISTA FANTOM5 ENCODE dbSUPER 0.4 -18.3 -18258 7.8 SP1 ZFX ELF3 ZNF148 NKRF MLLT1 ZNF121 POLR2A ZNF384 ZNF687 DIS3L2 RPL28P2 NCL GC02M231678 RN7SL499P
GH02J231648 Enhancer 1 ENCODE dbSUPER 0.7 -2.5 -2507 0.8 ELF3 CTCF AHR RAD21 IKZF1 PRDM10 ZIC2 REST PATZ1 KMT2B TEX44 RN7SL499P GC02M231678
GH02J231669 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 0.3 -27.0 -26959 6.9 SP1 CTCF ELF3 ZNF148 NKRF POLR2A ZNF687 TFE3 ELF1 SP7 DIS3L2 RPL28P2 COPS7B PTMA GC02M231678 RN7SL499P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SL499P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL499P Gene

Genomic Locations for RN7SL499P Gene
chr2:231,645,998-231,646,273
(GRCh38/hg38)
Size:
276 bases
Orientation:
Minus strand
chr2:232,510,711-232,510,984
(GRCh37/hg19)
Size:
274 bases
Orientation:
Minus strand

Genomic View for RN7SL499P Gene

Genes around RN7SL499P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL499P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL499P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL499P Gene

Proteins for RN7SL499P Gene

Post-translational modifications for RN7SL499P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL499P Gene

Domains & Families for RN7SL499P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL499P Gene

Function for RN7SL499P Gene

Phenotypes From GWAS Catalog for RN7SL499P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL499P Gene

Localization for RN7SL499P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL499P Gene

Pathways & Interactions for RN7SL499P Gene

PathCards logo

SuperPathways for RN7SL499P Gene

No Data Available

Interacting Proteins for RN7SL499P Gene

Gene Ontology (GO) - Biological Process for RN7SL499P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL499P Gene

Drugs & Compounds for RN7SL499P Gene

No Compound Related Data Available

Transcripts for RN7SL499P Gene

mRNA/cDNA for RN7SL499P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL499P Gene

No ASD Table

Relevant External Links for RN7SL499P Gene

GeneLoc Exon Structure for
RN7SL499P
ECgene alternative splicing isoforms for
RN7SL499P

Expression for RN7SL499P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL499P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL499P Gene:

RN7SL499P
genes like me logo Genes that share expression patterns with RN7SL499P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL499P Gene

Orthologs for RN7SL499P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SL499P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 99 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii Metazoa_SRP 35
  • 60 (a)
ManyToMany
Species where no ortholog for RN7SL499P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SL499P Gene

ENSEMBL:
Gene Tree for RN7SL499P (if available)
TreeFam:
Gene Tree for RN7SL499P (if available)

Paralogs for RN7SL499P Gene

No data available for Paralogs for RN7SL499P Gene

Variants for RN7SL499P Gene

Additional Variant Information for RN7SL499P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL499P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL499P Gene

Disorders for RN7SL499P Gene

No disorders were found for RN7SL499P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL499P Gene

Publications for RN7SL499P Gene

No publications were found for RN7SL499P Gene.

No data available for External Links for RN7SL499P Gene

Products for RN7SL499P Gene

Sources for RN7SL499P Gene

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