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Aliases for RN7SL180P Gene
External Ids for RN7SL180P Gene
- HGNC: 46196
- Entrez Gene: 106480970
- Ensembl: ENSG00000242860
Previous GeneCards Identifiers for RN7SL180P Gene
- GC01P062540
Summaries for RN7SL180P Gene
GeneCards Summary for RN7SL180P Gene
RN7SL180P (RNA, 7SL, Cytoplasmic 180, Pseudogene) is a Pseudogene.
Additional gene information for RN7SL180P Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SL180P Gene
Genomics for RN7SL180P Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for RN7SL180P Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J062076 | Enhancer | 0.6 | Ensembl | 0.7 | +4.1 | 4053 | 0.6 | ZNF692 JUND PKNOX1 ZNF600 ZNF10 OSR2 JUN ZBTB17 FOSL1 NFIC | PATJ L1TD1 MIR3116-1 RF00017-229 RN7SL180P lnc-L1TD1-5 | |
| GH01J062067 | Enhancer | 0.6 | Ensembl ENCODE | 0.7 | -3.6 | -3588 | 2.1 | POLR2A NR2F2 ZNF664 | PATJ RF00017-229 RN7SL180P lnc-L1TD1-5 lnc-L1TD1-6 L1TD1 | |
| GH01J062059 | Enhancer | 0.6 | Ensembl ENCODE | 0.4 | -13.7 | -13747 | 1.4 | TEAD4 POLR2A YY1 ETS1 MAFK | PATJ RN7SL180P RF00017-229 lnc-L1TD1-5 lnc-L1TD1-6 L1TD1 | |
| GH01J062070 | Enhancer | 0.3 | Ensembl | 0.7 | -2.3 | -2347 | 0.2 | CTCF ZNF664 | RF00017-229 RN7SL180P lnc-L1TD1-5 lnc-L1TD1-6 L1TD1 PATJ | |
| GH01J062040 | Enhancer | 0.7 | Ensembl ENCODE | 0.3 | -31.4 | -31363 | 1 | HNRNPL PRDM10 SOX13 WT1 NR2F6 SOX5 ZNF652 PPARG | PATJ L1TD1 lnc-L1TD1-6 lnc-L1TD1-5 RF00017-229 RN7SL180P |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RN7SL180P on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for RN7SL180P Gene
Genomic Locations for RN7SL180P Gene
- chr1:62,072,448-62,072,741
- (GRCh38/hg38)
- Size:
- 294 bases
- Orientation:
- Plus strand
- chr1:62,538,120-62,538,411
- (GRCh37/hg19)
- Size:
- 292 bases
- Orientation:
- Plus strand
Genomic View for RN7SL180P Gene
Genes around RN7SL180P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1p31.3 by HGNC
- 1p31.3 by Entrez Gene
- 1p31.3 by Ensembl
RN7SL180P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RN7SL180P Gene
Proteins for RN7SL180P Gene
Post-translational modifications for RN7SL180P Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RN7SL180P
- Origene Custom Protein Services for RN7SL180P
No data available for DME Specific Peptides for RN7SL180P Gene
Domains & Families for RN7SL180P Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SL180P Gene
Function for RN7SL180P Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for RN7SL180P
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL180P Gene
Localization for RN7SL180P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL180P Gene
Transcripts for RN7SL180P Gene
mRNA/cDNA for RN7SL180P Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000466769 294 nts (view in UCSC)
CRISPR Products
- Browse CRISPR knockouts for RN7SL180P
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for RN7SL180P Gene
- GeneLoc Exon Structure for
- RN7SL180P
Expression for RN7SL180P Gene
mRNA differential expression in normal tissues according to GTEx for RN7SL180P Gene
This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.4), Brain - Cerebellum (x4.6), and Prostate (x4.2).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL180P Gene
Orthologs for RN7SL180P Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | Metazoa_SRP 31 |
|
OneToOne |
- Species where no ortholog for RN7SL180P was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Oppossum (Monodelphis domestica)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for RN7SL180P Gene
No data available for Paralogs for RN7SL180P Gene
Variants for RN7SL180P Gene
Additional Variant Information for RN7SL180P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RN7SL180P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL180P Gene
Disorders for RN7SL180P Gene
Additional Disease Information for RN7SL180P
No disorders were found for RN7SL180P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RN7SL180P Gene
Publications for RN7SL180P Gene
No publications were found for RN7SL180P Gene.
No data available for Mastermind for RN7SL180P Gene
Products for RN7SL180P Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RN7SL180P
- Origene Custom Protein Services for RN7SL180P
- Browse OriGene Inhibitory RNA Products For RN7SL180P
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RN7SL180P
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RN7SL180P
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RN7SL180P
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RN7SL180P
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RN7SL180P
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RN7SL180P
Sources for RN7SL180P Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB