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Aliases for RN7SL116P Gene

Subcategory (RNA class) for RN7SL116P Gene

lncRNA

Aliases for RN7SL116P Gene

  • RNA, 7SL, Cytoplasmic 116, Pseudogene 2 3 5

External Ids for RN7SL116P Gene

ORGUL Members for RN7SL116P Gene

Previous GeneCards Identifiers for RN7SL116P Gene

  • GC20P037503

Summaries for RN7SL116P Gene

GeneCards Summary for RN7SL116P Gene

RN7SL116P (RNA, 7SL, Cytoplasmic 116, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SL116P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL116P Gene

Genomics for RN7SL116P Gene

GeneHancer (GH) Regulatory Elements for RN7SL116P Gene

Promoters and enhancers for RN7SL116P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I038870 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.0 1045 7.2 HDGF PKNOX1 SMAD1 IRF4 TCF12 GATA2 ZNF207 ZNF143 ATF7 RUNX3 RN7SL116P PPP1R16B FAM83D ACTR5 SLC32A1 DHX35 RALGAPB GC20M038907
GH20I038860 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.0 -9976 4.8 HDGF PKNOX1 ARNT ARID4B IRF4 TCF12 ZNF143 ATF7 RUNX3 REST PPP1R16B ACTR5 DHX35 RALGAPB RN7SL116P
GH20I038803 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 -66.2 -66176 6.3 HDGF PKNOX1 ATF1 FEZF1 IRF4 TCF12 POLR2B GLIS2 ZNF207 ZNF143 PPP1R16B ACTR5 ARHGAP40 RALGAPB DHX35 RN7SL116P
GH20I038857 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -14.0 -14019 2.2 PKNOX1 ATF1 TCF12 ZNF766 GATA2 E2F8 ATF7 RUNX3 REST ZNF592 RN7SL116P PPP1R16B
GH20I038839 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -29.9 -29867 6.2 YBX1 BATF TCF12 ZNF766 EGR1 ZNF143 ATF7 ETV6 BCLAF1 IKZF2 ACTR5 PPP1R16B RALGAPB DHX35 RN7SL116P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SL116P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL116P Gene

Genomic Locations for RN7SL116P Gene
chr20:38,872,770-38,873,074
(GRCh38/hg38)
Size:
305 bases
Orientation:
Plus strand
chr20:37,501,413-37,501,720
(GRCh37/hg19)

Genomic View for RN7SL116P Gene

Genes around RN7SL116P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL116P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL116P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL116P Gene

Proteins for RN7SL116P Gene

Post-translational modifications for RN7SL116P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL116P Gene

Domains & Families for RN7SL116P Gene

Gene Families for RN7SL116P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL116P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL116P Gene

Function for RN7SL116P Gene

Phenotypes From GWAS Catalog for RN7SL116P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL116P Gene

Localization for RN7SL116P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL116P Gene

Pathways & Interactions for RN7SL116P Gene

SuperPathways for RN7SL116P Gene

No Data Available

Interacting Proteins for RN7SL116P Gene

Gene Ontology (GO) - Biological Process for RN7SL116P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL116P Gene

Drugs & Compounds for RN7SL116P Gene

No Compound Related Data Available

Transcripts for RN7SL116P Gene

mRNA/cDNA for RN7SL116P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL116P Gene

No ASD Table

Relevant External Links for RN7SL116P Gene

GeneLoc Exon Structure for
RN7SL116P
ECgene alternative splicing isoforms for
RN7SL116P

Expression for RN7SL116P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL116P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL116P Gene:

RN7SL116P
genes like me logo Genes that share expression patterns with RN7SL116P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL116P Gene

Orthologs for RN7SL116P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL116P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 34
  • 96 (a)
OneToOne
Species where no ortholog for RN7SL116P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL116P Gene

ENSEMBL:
Gene Tree for RN7SL116P (if available)
TreeFam:
Gene Tree for RN7SL116P (if available)

Paralogs for RN7SL116P Gene

No data available for Paralogs for RN7SL116P Gene

Variants for RN7SL116P Gene

Additional Variant Information for RN7SL116P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL116P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL116P Gene

Disorders for RN7SL116P Gene

No disorders were found for RN7SL116P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL116P Gene

Publications for RN7SL116P Gene

No publications were found for RN7SL116P Gene.

Products for RN7SL116P Gene

Sources for RN7SL116P Gene

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