Aliases for RN7SKP80 Gene

Aliases for RN7SKP80 Gene

  • RN7SK Pseudogene 80 2 3 5
  • RNA, 7SK Small Nuclear Pseudogene 80 2 3
  • RN7SKP80 5

External Ids for RN7SKP80 Gene

Previous GeneCards Identifiers for RN7SKP80 Gene

  • GC22M042963
  • GC22M042968

Summaries for RN7SKP80 Gene

GeneCards Summary for RN7SKP80 Gene

RN7SKP80 (RN7SK Pseudogene 80) is a Pseudogene.

Additional gene information for RN7SKP80 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SKP80 Gene

Genomics for RN7SKP80 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RN7SKP80 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J042565 Enhancer 0.3 Ensembl 600.7 +0.2 164 0.5 ZBTB33 ZNF121 RF00100-080 RN7SKP80 lnc-POLDIP3-2 RRP7BP SERHL2 POLDIP3
GH22J042612 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 72.8 -49.2 -49154 4.3 BRCA1 ARHGAP35 SP1 HNRNPL GATAD2A CTCF PRDM10 REST ZNF629 TFE3 POLDIP3 ENSG00000270022 RNU12 lnc-CYB5R3-1 RN7SKP80 XRCC6 RPL5P34 RRP7BP NAGA PHETA2
GH22J041666 Promoter/Enhancer 1.5 ENCODE CraniofacialAtlas 77.4 +897.9 897879 2.5 GATAD2A CTCF PRDM10 ZNF629 TFE3 IKZF1 ZNF692 POLR2A BACH1 JUND lnc-SNU13-1 piR-43105-438 RN7SKP80 EP300 PHF5A RRP7BP POLDIP3 ENSG00000232754 SLC25A17 MEI1
GH22J042564 Enhancer 0.2 Ensembl 600.7 +1.0 1029 0.2 RF00100-080 RN7SKP80 lnc-POLDIP3-2 CYB5R3 SERHL2 RRP7BP POLDIP3
GH22J041961 Enhancer 0.8 ENCODE 66.5 +604.2 604238 0.2 ZNF629 ZNF692 ZNF501 ZNF341 SCRT2 RBAK ZNF140 ZNF10 ZXDB ZEB1 RN7SKP80 PHF5A EP300 POLDIP3 RPL5P34 NDUFA6 RRP7BP WBP2NL L3MBTL2 ENSG00000232754
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP80 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RN7SKP80 Gene

Genomic Locations for RN7SKP80 Gene
chr22:42,565,048-42,565,330
(GRCh38/hg38)
Size:
283 bases
Orientation:
Minus strand
chr22:42,961,054-42,961,336
(GRCh37/hg19)
Size:
283 bases
Orientation:
Minus strand

Genomic View for RN7SKP80 Gene

Genes around RN7SKP80 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP80 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP80 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP80 Gene

Proteins for RN7SKP80 Gene

Post-translational modifications for RN7SKP80 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP80 Gene

Domains & Families for RN7SKP80 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SKP80 Gene

Function for RN7SKP80 Gene

Phenotypes From GWAS Catalog for RN7SKP80 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP80 Gene

Localization for RN7SKP80 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP80 Gene

Pathways & Interactions for RN7SKP80 Gene

PathCards logo

SuperPathways for RN7SKP80 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RN7SKP80 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SKP80 Gene

Drugs & Compounds for RN7SKP80 Gene

No Compound Related Data Available

Transcripts for RN7SKP80 Gene

mRNA/cDNA for RN7SKP80 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP80 Gene

No ASD Table

Relevant External Links for RN7SKP80 Gene

GeneLoc Exon Structure for
RN7SKP80

Expression for RN7SKP80 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP80 Gene

genes like me logo Genes that share expression patterns with RN7SKP80: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP80 Gene

Orthologs for RN7SKP80 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP80 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 7SK 31
  • 95 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia 7SK 31
  • 79 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm23973 31
  • 71 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia 7SK 31
  • 70 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia 7SK 31
  • 79 (a)
OneToMany
Species where no ortholog for RN7SKP80 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RN7SKP80 Gene

ENSEMBL:
Gene Tree for RN7SKP80 (if available)
TreeFam:
Gene Tree for RN7SKP80 (if available)

Paralogs for RN7SKP80 Gene

No data available for Paralogs for RN7SKP80 Gene

Variants for RN7SKP80 Gene

Additional Variant Information for RN7SKP80 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP80

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP80 Gene

Disorders for RN7SKP80 Gene

Additional Disease Information for RN7SKP80

No disorders were found for RN7SKP80 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RN7SKP80 Gene

Publications for RN7SKP80 Gene

No publications were found for RN7SKP80 Gene.

Products for RN7SKP80 Gene

Sources for RN7SKP80 Gene