Aliases for RN7SKP78 Gene

Aliases for RN7SKP78 Gene

  • RN7SK Pseudogene 78 2 3 5
  • RNA, 7SK Small Nuclear Pseudogene 78 2 3
  • RN7SKP78 5

External Ids for RN7SKP78 Gene

Previous GeneCards Identifiers for RN7SKP78 Gene

  • GC10P006193

Summaries for RN7SKP78 Gene

GeneCards Summary for RN7SKP78 Gene

RN7SKP78 (RN7SK Pseudogene 78) is a Pseudogene.

Additional gene information for RN7SKP78 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SKP78 Gene

Genomics for RN7SKP78 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RN7SKP78 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J006150 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.8 1773 2 IKZF1 CTCF REST SIN3A TRIM22 ZNF341 MNT SMC3 NKRF ELF1 HSALNG0075924 HSALNG0075925 RN7SKP78 MIR3155A MIR3155B lnc-RBM17-3 PFKFB3 IL15RA RBM17 GDI2
GH10J006148 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 250.7 -0.9 -938 1 ZIC2 POLR2A BMI1 HDGF MEIS2 PKNOX1 KLF10 IKZF1 ATF3 RFX1 HSALNG0075925 RN7SKP78 lnc-RBM17-3 PFKFB3 IL15RA RBM17 HSALNG0075924 PRKCQ
GH10J006155 Promoter 0.4 Ensembl 250.7 +0.4 378 0.4 ZNF146 HSALNG0075924 HSALNG0075925 RN7SKP78 lnc-RBM17-3 PFKFB3 PRKCQ
GH10J005559 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.4 -589.9 -589922 3 NCOR1 IKZF1 ARNT NBN SKIL RAD21 HDAC2 ZC3H8 JUND EGR1 HSALNG0075873 CALML3 CALML3-AS1 ENSG00000256462 CALML5 RN7SKP78 lnc-CALML5-7 LOC105376381 ASB13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP78 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RN7SKP78 Gene

Latest Assembly
chr10:6,149,623-6,149,940
(GRCh38/hg38)
Size:
318 bases
Orientation:
Plus strand

Previous Assembly
chr10:6,191,586-6,191,836
(GRCh37/hg19 by Entrez Gene)
Size:
251 bases
Orientation:
Plus strand

chr10:6,191,586-6,191,903
(GRCh37/hg19 by Ensembl)
Size:
318 bases
Orientation:
Plus strand

Genomic View for RN7SKP78 Gene

Genes around RN7SKP78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP78 Gene

Proteins for RN7SKP78 Gene

Post-translational modifications for RN7SKP78 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP78 Gene

Domains & Families for RN7SKP78 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SKP78 Gene

Function for RN7SKP78 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP78 Gene

Localization for RN7SKP78 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP78 Gene

Pathways & Interactions for RN7SKP78 Gene

PathCards logo

SuperPathways for RN7SKP78 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RN7SKP78 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SKP78 Gene

Drugs & Compounds for RN7SKP78 Gene

No Compound Related Data Available

Transcripts for RN7SKP78 Gene

mRNA/cDNA for RN7SKP78 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP78 Gene

No ASD Table

Relevant External Links for RN7SKP78 Gene

GeneLoc Exon Structure for
RN7SKP78

Expression for RN7SKP78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP78 Gene

genes like me logo Genes that share expression patterns with RN7SKP78: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP78 Gene

Orthologs for RN7SKP78 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP78 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 7SK 30
  • 87 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm25545 30
  • 68 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia 7SK 30
  • 63 (a)
ManyToMany
Species where no ortholog for RN7SKP78 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RN7SKP78 Gene

ENSEMBL:
Gene Tree for RN7SKP78 (if available)
TreeFam:
Gene Tree for RN7SKP78 (if available)
Alliance of Genome Resources:
Additional Orthologs for RN7SKP78

Paralogs for RN7SKP78 Gene

No data available for Paralogs for RN7SKP78 Gene

Variants for RN7SKP78 Gene

Additional Variant Information for RN7SKP78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP78
Leiden Open Variation Database (LOVD)
RN7SKP78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP78 Gene

Disorders for RN7SKP78 Gene

Additional Disease Information for RN7SKP78

Open Targets Platform
Open Targets Platform

No disorders were found for RN7SKP78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RN7SKP78 Gene

Publications for RN7SKP78 Gene

No publications were found for RN7SKP78 Gene.

No data available for Mastermind for RN7SKP78 Gene

Products for RN7SKP78 Gene

Sources for RN7SKP78 Gene