Aliases for RN7SKP55 Gene

Aliases for RN7SKP55 Gene

  • RN7SK Pseudogene 55 2 3 5
  • RNA, 7SK Small Nuclear Pseudogene 55 2 3

External Ids for RN7SKP55 Gene

Previous GeneCards Identifiers for RN7SKP55 Gene

  • GC01P245110

Summaries for RN7SKP55 Gene

GeneCards Summary for RN7SKP55 Gene

RN7SKP55 (RN7SK Pseudogene 55) is a Pseudogene.

Additional gene information for RN7SKP55 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SKP55 Gene

Genomics for RN7SKP55 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP55 Gene

Promoters and enhancers for RN7SKP55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J244945 Enhancer 0.9 ENCODE dbSUPER 500.7 +1.7 1678 1 SP1 EP300 RELA MEF2C TRIM22 BCL11A ZNF384 MEF2B NBN SMARCA5 RN7SKP55 lnc-EFCAB2-4 lnc-EFCAB2-3
GH01J244874 Enhancer 0.6 Ensembl 5.2 -68.8 -68809 1 ZIC2 ZNF423 OSR2 WT1 ZBTB17 ZFHX2 IKZF3 SCRT1 PRDM6 ZNF664 RNU6-947P RN7SKP55 HSALNG0012115 HSALNG0012119
GH01J244940 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -3.3 -3309 2.4 RBAK EP300 ZNF623 ZNF510 RELA ZNF341 BCL11A ZNF266 MYNN TCF12 ENSG00000272195 HNRNPU CATSPERE COX20 DESI2 RN7SKP55 lnc-EFCAB2-4 HSALNG0012119
GH01J244918 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas 0.4 -24.9 -24939 1.3 EP300 ZSCAN5C NRF1 ZIC2 POLR2A ZBTB11 ZBTB26 TRIM28 REST HES1 RNU6-947P COX20 ENSG00000272195 EFCAB2 HSALNG0012119 lnc-EFCAB2-4 RN7SKP55
GH01J244920 Enhancer 0.7 ENCODE 0.4 -22.9 -22911 1 MEF2C MYC RBM25 BCL11A KDM1A TCF12 POLR2A CEBPG FOS SRF RNU6-947P HSALNG0012119 lnc-EFCAB2-4 RN7SKP55
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP55 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP55 Gene

Genomic Locations for RN7SKP55 Gene
chr1:244,943,910-244,944,216
(GRCh38/hg38)
Size:
307 bases
Orientation:
Plus strand
chr1:245,107,212-245,107,518
(GRCh37/hg19)
Size:
307 bases
Orientation:
Plus strand

Genomic View for RN7SKP55 Gene

Genes around RN7SKP55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP55 Gene

Proteins for RN7SKP55 Gene

Post-translational modifications for RN7SKP55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP55 Gene

Domains & Families for RN7SKP55 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SKP55 Gene

Function for RN7SKP55 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP55 Gene

Localization for RN7SKP55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP55 Gene

Pathways & Interactions for RN7SKP55 Gene

PathCards logo

SuperPathways for RN7SKP55 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RN7SKP55 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SKP55 Gene

Drugs & Compounds for RN7SKP55 Gene

No Compound Related Data Available

Transcripts for RN7SKP55 Gene

mRNA/cDNA for RN7SKP55 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP55 Gene

No ASD Table

Relevant External Links for RN7SKP55 Gene

GeneLoc Exon Structure for
RN7SKP55

Expression for RN7SKP55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP55 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP55 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x18.1) and Brain - Cerebellum (x14.5).
genes like me logo Genes that share expression patterns with RN7SKP55: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP55 Gene

Orthologs for RN7SKP55 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 31
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 7SK 31
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 7SK 31
  • 72 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25782 31
  • 63 (a)
ManyToMany
chicken
(Gallus gallus)
Aves 7SK 31
  • 80 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 31
  • 77 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii rn7sk 31
  • 75 (a)
OneToMany
Species where no ortholog for RN7SKP55 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SKP55 Gene

ENSEMBL:
Gene Tree for RN7SKP55 (if available)
TreeFam:
Gene Tree for RN7SKP55 (if available)

Paralogs for RN7SKP55 Gene

No data available for Paralogs for RN7SKP55 Gene

Variants for RN7SKP55 Gene

Additional Variant Information for RN7SKP55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP55 Gene

Disorders for RN7SKP55 Gene

No disorders were found for RN7SKP55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP55 Gene

Publications for RN7SKP55 Gene

No publications were found for RN7SKP55 Gene.

No data available for Mastermind for RN7SKP55 Gene

Products for RN7SKP55 Gene

Sources for RN7SKP55 Gene