Aliases for RN7SKP48 Gene
Subcategory (RNA class) for RN7SKP48 Gene
7SK RNA
External Ids for RN7SKP48 Gene
- HGNC: 45772
- Entrez Gene: 106479116
- Ensembl: ENSG00000201901
ORGUL Members for RN7SKP48 Gene
Previous GeneCards Identifiers for RN7SKP48 Gene
- GC04P086023
Summaries for RN7SKP48 Gene
GeneCards Summary for RN7SKP48 Gene
RN7SKP48 (RNA, 7SK Small Nuclear Pseudogene 48) is a Pseudogene, and is affiliated with the 7SK RNA class.
Additional gene information for RN7SKP48 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP48 Gene
Genomics for RN7SKP48 Gene
GeneHancer (GH) Regulatory Elements for RN7SKP48 Gene
Promoters and enhancers for RN7SKP48 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04I085126 | Enhancer | 0.7 | ENCODE | 0.3 | +27.1 | 27055 | 1.3 | CTCF TFAP4 USF1 MAX SIN3A ZNF384 ZIC2 ZNF644 RAD21 ZNF143 | ARHGAP24 RN7SKP48 | |
| GH04I085147 | Enhancer | 0.6 | ENCODE | 0.2 | +47.2 | 47197 | 0.1 | CTCF ZNF654 BHLHE40 TRIM22 DACH1 REST RAD21 NFIL3 SMC3 ZNF143 | ARHGAP24 RN7SKP48 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around RN7SKP48 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for RN7SKP48 Gene
Genomic Locations for RN7SKP48 Gene
- chr4:85,100,496-85,100,823
- (GRCh38/hg38)
- Size:
- 328 bases
- Orientation:
- Plus strand
- chr4:86,021,649-86,021,976
- (GRCh37/hg19)
Genomic View for RN7SKP48 Gene
Genes around RN7SKP48 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4q21.23 by Ensembl
- 4q21.23 by Entrez Gene
- 4q21.23 by HGNC
RN7SKP48 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RN7SKP48 Gene
Proteins for RN7SKP48 Gene
Post-translational modifications for RN7SKP48 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for RN7SKP48
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RN7SKP48
- Origene Custom Protein Services for RN7SKP48
- Search GeneTex for Proteins for RN7SKP48
No data available for DME Specific Peptides for RN7SKP48 Gene
Domains & Families for RN7SKP48 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP48 Gene
Function for RN7SKP48 Gene
Phenotypes From GWAS Catalog for RN7SKP48 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for RN7SKP48
-
- Search ViGene Biosciences for RN7SKP48
CRISPR Products
- Browse CRISPR knockouts for RN7SKP48
miRNA Products
- Search ViGene Biosciences for RN7SKP48
Inhibitory RNA Products
- Search ViGene Biosciences for RN7SKP48
Clone Products
- GenScript: Custom all cDNA clones Services for RN7SKP48
- VectorBuilder custom plasmid, inducible vectors for RN7SKP48
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RN7SKP48
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP48 Gene
Localization for RN7SKP48 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP48 Gene
Transcripts for RN7SKP48 Gene
mRNA/cDNA for RN7SKP48 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for RN7SKP48
miRNA Products
- Search ViGene Biosciences for RN7SKP48
Inhibitory RNA Products
- Search ViGene Biosciences for RN7SKP48
Clone Products
- GenScript: Custom all cDNA clones Services for RN7SKP48
- VectorBuilder custom plasmid, inducible vectors for RN7SKP48
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RN7SKP48
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for RN7SKP48 Gene
NURSA nuclear receptor signaling pathways regulating expression of RN7SKP48 Gene:
RN7SKP48
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP48 Gene
Orthologs for RN7SKP48 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | 7SK 34 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | 7SK 34 |
|
ManyToMany | |
| dog (Canis familiaris) |
Mammalia | 7SK 34 |
|
ManyToMany | |
| mouse (Mus musculus) |
Mammalia | Gm25782 34 |
|
ManyToMany | |
| chicken (Gallus gallus) |
Aves | 7SK 34 |
|
OneToMany | |
| lizard (Anolis carolinensis) |
Reptilia | 7SK 34 |
|
ManyToMany | |
| zebrafish (Danio rerio) |
Actinopterygii | rn7sk 34 |
|
OneToMany |
- Species where no ortholog for RN7SKP48 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for RN7SKP48 Gene
No data available for Paralogs for RN7SKP48 Gene
Variants for RN7SKP48 Gene
Additional Variant Information for RN7SKP48 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RN7SKP48
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP48 Gene
Disorders for RN7SKP48 Gene
No disorders were found for RN7SKP48 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP48 Gene
Publications for RN7SKP48 Gene
No publications were found for RN7SKP48 Gene.
Products for RN7SKP48 Gene
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- Custom Assay Services
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- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for RN7SKP48
- VectorBuilder custom plasmid, inducible vectors for RN7SKP48
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RN7SKP48
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for RN7SKP48
- Search GeneTex for Proteins for RN7SKP48
- Search ViGene Biosciences for RN7SKP48
Sources for RN7SKP48 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
