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Aliases for RN7SKP42 Gene

Subcategory (RNA class) for RN7SKP42 Gene


Aliases for RN7SKP42 Gene

  • RNA, 7SK Small Nuclear Pseudogene 42 2 3 5

External Ids for RN7SKP42 Gene

ORGUL Members for RN7SKP42 Gene

Previous GeneCards Identifiers for RN7SKP42 Gene

  • GC02M187989

Summaries for RN7SKP42 Gene

GeneCards Summary for RN7SKP42 Gene

RN7SKP42 (RNA, 7SK Small Nuclear Pseudogene 42) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP42 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

Additional gene information for RN7SKP42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP42 Gene

Genomics for RN7SKP42 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP42 Gene

Promoters and enhancers for RN7SKP42 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J187168 Enhancer 0.7 ENCODE 0.2 -46.4 -46405 0.9 SMAD1 TRIM22 BMI1 MEF2B DPF2 ATF2 ZNF217 BCL11A TARDBP IKZF1 PIR47002 RN7SKP42 LOC105373786
GH02J187003 Promoter 1.2 Ensembl 0.1 +119.3 119261 0.8 PKNOX1 ATF1 ARNT YY1 POLR2B ZNF766 CBX5 E2F8 ATF7 CAVIN1 GC02M187005 GC02M187006 LOC105373786 PIR42677 GC02P187005 PIR60867 PIR56509 IMPDH1P7 GAPDHP59 RN7SKP42
GH02J187128 Enhancer 0.2 ENCODE 0.4 -6.8 -6812 1.4 RN7SKP42 PIR47002 LOC105373786
GH02J187102 Enhancer 0.2 ENCODE 0.3 +20.3 20272 0.2 RN7SKP42 LOC105373786 IMPDH1P7
GH02J187009 Enhancer 0.5 ENCODE 0.1 +113.0 113022 0 ZNF740 NFIB DACH1 FOS GTF2A2 LOC105373786 IMPDH1P7 RN7SKP42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP42 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP42 Gene

Genomic Locations for RN7SKP42 Gene
300 bases
Minus strand
300 bases
Minus strand

Genomic View for RN7SKP42 Gene

Genes around RN7SKP42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP42 Gene

Function for RN7SKP42 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP42 Gene

Localization for RN7SKP42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP42 Gene

Pathways & Interactions for RN7SKP42 Gene

SuperPathways for RN7SKP42 Gene

No Data Available

Interacting Proteins for RN7SKP42 Gene

Gene Ontology (GO) - Biological Process for RN7SKP42 Gene


No data available for Pathways by source and SIGNOR curated interactions for RN7SKP42 Gene

Drugs & Compounds for RN7SKP42 Gene

No Compound Related Data Available

Transcripts for RN7SKP42 Gene

mRNA/cDNA for RN7SKP42 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP42 Gene

No ASD Table

Relevant External Links for RN7SKP42 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RN7SKP42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP42 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP42 Gene:

genes like me logo Genes that share expression patterns with RN7SKP42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP42 Gene

Orthologs for RN7SKP42 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP42 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia 7SK 34
  • 97 (a)
(Mus musculus)
Mammalia Gm26372 34
  • 63 (a)
(Canis familiaris)
Mammalia 7SK 34
  • 55 (a)
Species where no ortholog for RN7SKP42 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP42 Gene

Gene Tree for RN7SKP42 (if available)
Gene Tree for RN7SKP42 (if available)

Paralogs for RN7SKP42 Gene

No data available for Paralogs for RN7SKP42 Gene

Variants for RN7SKP42 Gene

Additional Variant Information for RN7SKP42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP42 Gene

Disorders for RN7SKP42 Gene

No disorders were found for RN7SKP42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP42 Gene

Publications for RN7SKP42 Gene

No publications were found for RN7SKP42 Gene.

Products for RN7SKP42 Gene

Sources for RN7SKP42 Gene

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