Aliases for RN7SKP39 Gene

Aliases for RN7SKP39 Gene

  • RN7SK Pseudogene 39 2 3 5
  • RNA, 7SK Small Nuclear Pseudogene 39 2 3

External Ids for RN7SKP39 Gene

Previous GeneCards Identifiers for RN7SKP39 Gene

  • GC10M028733

Summaries for RN7SKP39 Gene

GeneCards Summary for RN7SKP39 Gene

RN7SKP39 (RN7SK Pseudogene 39) is a Pseudogene.

Additional gene information for RN7SKP39 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SKP39 Gene

Genomics for RN7SKP39 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP39 Gene

Promoters and enhancers for RN7SKP39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J028443 Enhancer 0.7 FANTOM5 ENCODE 750.6 -1.2 -1163 0.9 ZNF384 GATA3 ELF1 TEAD3 TEAD2 RF00100-017 RN7SKP39 lnc-MPP7-6 piR-56133-024 LINC02652
GH10J028838 Enhancer 1.1 Ensembl ENCODE 14.6 -396.3 -396337 2.9 ZBTB40 ZBTB6 SMARCE1 NR2F6 CC2D1A DACH1 ZNF121 TEAD4 ZKSCAN8 RERE ENSG00000271220 LINC01517 LINC02652 RN7SKP39 RPSAP10 ZNF101P1 LINC00837 RNU6-270P RPL21P93 lnc-MPP7-8
GH10J028445 Enhancer 0.6 Ensembl 0.6 -2.8 -2805 0.2 ELF3 CEBPG ZNF644 CEBPA SOX13 FOXA2 SAP130 TEAD1 CEBPB TEAD3 RF00100-017 RN7SKP39 lnc-MPP7-6 piR-56133-024 LINC02652
GH10J028459 Enhancer 0.6 Ensembl 0.4 -15.0 -15005 0.2 SMARCE1 CBFA2T2 SMARCA4 TRIM24 HDAC1 NCOR1 ZNF335 TCF12 TAL1 KDM1A piR-56133-024 ENSG00000222666 RF00100-017 RN7SKP39 lnc-MPP7-6 LINC02652
GH10J028437 Enhancer 0.4 FANTOM5 Ensembl 0.4 +5.8 5795 0.2 RPSAP10 ENSG00000222666 RF00100-017 RN7SKP39 lnc-MPP7-6 LINC02652
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP39 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP39 Gene

Genomic Locations for RN7SKP39 Gene
chr10:28,442,575-28,442,896
(GRCh38/hg38)
Size:
322 bases
Orientation:
Minus strand
chr10:28,731,504-28,731,825
(GRCh37/hg19)
Size:
322 bases
Orientation:
Minus strand

Genomic View for RN7SKP39 Gene

Genes around RN7SKP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP39 Gene

Proteins for RN7SKP39 Gene

Post-translational modifications for RN7SKP39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP39 Gene

Domains & Families for RN7SKP39 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SKP39 Gene

Function for RN7SKP39 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP39 Gene

Localization for RN7SKP39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP39 Gene

Pathways & Interactions for RN7SKP39 Gene

PathCards logo

SuperPathways for RN7SKP39 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RN7SKP39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP39 Gene

Drugs & Compounds for RN7SKP39 Gene

No Compound Related Data Available

Transcripts for RN7SKP39 Gene

mRNA/cDNA for RN7SKP39 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP39 Gene

No ASD Table

Relevant External Links for RN7SKP39 Gene

GeneLoc Exon Structure for
RN7SKP39
ECgene alternative splicing isoforms for
RN7SKP39

Expression for RN7SKP39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP39 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP39 Gene:

RN7SKP39
genes like me logo Genes that share expression patterns with RN7SKP39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP39 Gene

Orthologs for RN7SKP39 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP39 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 33
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 33
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25782 33
  • 53 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 7SK 33
  • 49 (a)
OneToOne
chicken
(Gallus gallus)
Aves 7SK 33
  • 62 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 33
  • 52 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rn7sk 33
  • 59 (a)
OneToMany
Species where no ortholog for RN7SKP39 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SKP39 Gene

ENSEMBL:
Gene Tree for RN7SKP39 (if available)
TreeFam:
Gene Tree for RN7SKP39 (if available)

Paralogs for RN7SKP39 Gene

No data available for Paralogs for RN7SKP39 Gene

Variants for RN7SKP39 Gene

Additional Variant Information for RN7SKP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP39 Gene

Disorders for RN7SKP39 Gene

No disorders were found for RN7SKP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP39 Gene

Publications for RN7SKP39 Gene

No publications were found for RN7SKP39 Gene.

No data available for External Links for RN7SKP39 Gene

Products for RN7SKP39 Gene

Sources for RN7SKP39 Gene