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Aliases for RN7SKP38 Gene

Subcategory (RNA class) for RN7SKP38 Gene


Aliases for RN7SKP38 Gene

  • RNA, 7SK Small Nuclear Pseudogene 38 2 3 5

External Ids for RN7SKP38 Gene

ORGUL Members for RN7SKP38 Gene

Previous GeneCards Identifiers for RN7SKP38 Gene

  • GC02M219366

Summaries for RN7SKP38 Gene

GeneCards Summary for RN7SKP38 Gene

RN7SKP38 (RNA, 7SK Small Nuclear Pseudogene 38) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP38 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

Additional gene information for RN7SKP38 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP38 Gene

Genomics for RN7SKP38 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP38 Gene

Promoters and enhancers for RN7SKP38 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J218501 Enhancer 0.5 Ensembl ENCODE 650.7 -0.7 -685 1 SP1 RN7SKP38 CNOT9 GC02M218505 USP37
GH02J218417 Promoter/Enhancer 1.5 EPDnew ENCODE 0.2 +80.7 80681 5.9 PKNOX1 MLX ARNT ZFP64 ARID4B DMAP1 SLC30A9 FOS SP5 NFYC VIL1 CNOT9 USP37 TTLL4 RN7SKP38
GH02J218470 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.3 +29.6 29556 1.9 HMBOX1 ETV6 CNOT9 MIR26B TMBIM1 PNKD AAMP USP37 RN7SKP38 VIL1
GH02J218443 Enhancer 1 ENCODE 0.2 +55.2 55202 4.1 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 TCF12 CNOT9 PLCD4 USP37 VIL1 RN7SKP38
GH02J218449 Enhancer 0.9 ENCODE 0.2 +51.9 51904 0.2 FOXA2 ARID4B FOS RXRA SP5 NFIL3 SSRP1 ATF4 RCOR2 ETV4 CNOT9 USP37 PLCD4 VIL1 RN7SKP38
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP38 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP38 Gene

Genomic Locations for RN7SKP38 Gene
309 bases
Minus strand
309 bases
Minus strand

Genomic View for RN7SKP38 Gene

Genes around RN7SKP38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP38 Gene

Function for RN7SKP38 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP38 Gene

Localization for RN7SKP38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP38 Gene

Pathways & Interactions for RN7SKP38 Gene

SuperPathways for RN7SKP38 Gene

No Data Available

Interacting Proteins for RN7SKP38 Gene

Gene Ontology (GO) - Biological Process for RN7SKP38 Gene


No data available for Pathways by source and SIGNOR curated interactions for RN7SKP38 Gene

Drugs & Compounds for RN7SKP38 Gene

No Compound Related Data Available

Transcripts for RN7SKP38 Gene

mRNA/cDNA for RN7SKP38 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP38 Gene

No ASD Table

Relevant External Links for RN7SKP38 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RN7SKP38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP38 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP38 Gene:

genes like me logo Genes that share expression patterns with RN7SKP38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP38 Gene

Orthologs for RN7SKP38 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP38 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia 7SK 34
  • 98 (a)
(Canis familiaris)
Mammalia 7SK 34
  • 60 (a)
Species where no ortholog for RN7SKP38 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP38 Gene

Gene Tree for RN7SKP38 (if available)
Gene Tree for RN7SKP38 (if available)

Paralogs for RN7SKP38 Gene

No data available for Paralogs for RN7SKP38 Gene

Variants for RN7SKP38 Gene

Additional Variant Information for RN7SKP38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP38 Gene

Disorders for RN7SKP38 Gene

No disorders were found for RN7SKP38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP38 Gene

Publications for RN7SKP38 Gene

No publications were found for RN7SKP38 Gene.

Products for RN7SKP38 Gene

Sources for RN7SKP38 Gene

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