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Aliases for RN7SKP264 Gene

Subcategory (RNA class) for RN7SKP264 Gene

lncRNA

Aliases for RN7SKP264 Gene

  • RNA, 7SK Small Nuclear Pseudogene 264 2 3 5

External Ids for RN7SKP264 Gene

ORGUL Members for RN7SKP264 Gene

Previous GeneCards Identifiers for RN7SKP264 Gene

  • GC09M088875

Summaries for RN7SKP264 Gene

GeneCards Summary for RN7SKP264 Gene

RN7SKP264 (RNA, 7SK Small Nuclear Pseudogene 264) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SKP264 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP264 Gene

Genomics for RN7SKP264 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP264 Gene

Promoters and enhancers for RN7SKP264 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J086280 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 25.8 -23.7 -23713 2.8 HDGF PKNOX1 CLOCK ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ISCA1 GOLM1 C9orf153 RN7SKP264 ENSG00000270688 LOC102724080 LOC100287212 ENSG00000232211 ENSG00000229454 LOC494127
GH09J085740 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 +516.5 516517 3.7 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 ZNF213 AGTPBP1 ENSG00000229454 LOC100287212 ENSG00000270688 RN7SKP264 LOC102724080 ENSG00000232211 LOC389765 LOC100130049 GC09M085748
GH09J086941 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 14.6 -687.1 -687064 8.1 PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 YY1 ZNF213 ZNF143 KLF13 REST PIR61502 GAS1 LOC494127 ENSG00000232211 LOC102724080 RN7SKP264 ELF2P3 ENSG00000270688 LOC100287212 FBP2P1
GH09J086349 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10 -94.4 -94436 6.2 HDGF PKNOX1 CLOCK ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 IRF4 TUT7 C9orf153 RN7SKP264 LOC389765 GC09M086340
GH09J086738 Enhancer 0.8 ENCODE 14.6 -479.8 -479825 0.1 PKNOX1 ZNF133 KLF17 GLI4 ZNF2 ZNF155 FOS KLF13 ZNF680 ZNF280D ENSG00000232211 LOC102724080 LOC494127 RN7SKP264 ENSG00000270688 LOC100287212 ENSG00000229454 GAS1 GAS1RR GC09M086730
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP264 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP264 Gene

Genomic Locations for RN7SKP264 Gene
chr9:86,258,358-86,258,646
(GRCh38/hg38)
Size:
289 bases
Orientation:
Minus strand
chr9:88,873,273-88,873,561
(GRCh37/hg19)
Size:
289 bases
Orientation:
Minus strand

Genomic View for RN7SKP264 Gene

Genes around RN7SKP264 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP264 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP264 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP264 Gene

Proteins for RN7SKP264 Gene

Post-translational modifications for RN7SKP264 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP264 Gene

Domains & Families for RN7SKP264 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP264 Gene

Function for RN7SKP264 Gene

Phenotypes From GWAS Catalog for RN7SKP264 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP264 Gene

Localization for RN7SKP264 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP264 Gene

Pathways & Interactions for RN7SKP264 Gene

SuperPathways for RN7SKP264 Gene

No Data Available

Interacting Proteins for RN7SKP264 Gene

Gene Ontology (GO) - Biological Process for RN7SKP264 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP264 Gene

Drugs & Compounds for RN7SKP264 Gene

No Compound Related Data Available

Transcripts for RN7SKP264 Gene

mRNA/cDNA for RN7SKP264 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP264 Gene

No ASD Table

Relevant External Links for RN7SKP264 Gene

GeneLoc Exon Structure for
RN7SKP264
ECgene alternative splicing isoforms for
RN7SKP264

Expression for RN7SKP264 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP264 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP264 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP264 Gene:

RN7SKP264
genes like me logo Genes that share expression patterns with RN7SKP264: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP264 Gene

Orthologs for RN7SKP264 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP264 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 7SK 34
  • 59 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23250 34
  • 59 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 41 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea 7SK 34 34 34
  • 33 (a)
ManyToMany
Species where no ortholog for RN7SKP264 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP264 Gene

ENSEMBL:
Gene Tree for RN7SKP264 (if available)
TreeFam:
Gene Tree for RN7SKP264 (if available)

Paralogs for RN7SKP264 Gene

No data available for Paralogs for RN7SKP264 Gene

Variants for RN7SKP264 Gene

Additional Variant Information for RN7SKP264 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP264

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP264 Gene

Disorders for RN7SKP264 Gene

No disorders were found for RN7SKP264 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP264 Gene

Publications for RN7SKP264 Gene

No publications were found for RN7SKP264 Gene.

Products for RN7SKP264 Gene

Sources for RN7SKP264 Gene

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