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Aliases for RN7SKP243 Gene

Subcategory (RNA class) for RN7SKP243 Gene

7SK RNA

Aliases for RN7SKP243 Gene

  • RNA, 7SK Small Nuclear Pseudogene 243 2 3 5

External Ids for RN7SKP243 Gene

ORGUL Members for RN7SKP243 Gene

Previous GeneCards Identifiers for RN7SKP243 Gene

  • GC11M073545

Summaries for RN7SKP243 Gene

GeneCards Summary for RN7SKP243 Gene

RN7SKP243 (RNA, 7SK Small Nuclear Pseudogene 243) is a Pseudogene, and is affiliated with the 7SK RNA class.

Additional gene information for RN7SKP243 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP243 Gene

Genomics for RN7SKP243 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP243 Gene

Promoters and enhancers for RN7SKP243 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I073786 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +44.3 44329 3.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MRPL48 POLD3 ENSG00000206913 RNF169 ARPC3P4 RAB6A C2CD3 P4HA3 ENSG00000256034 ENSG00000254837
GH11I073838 Enhancer 0.4 FANTOM5 ENCODE 0.4 -5.9 -5943 1 MRPL48 RAB6A PLEKHB1 GC11M073833 RN7SKP243 CCDC58P5
GH11I073818 Enhancer 0.3 ENCODE 0.4 +13.9 13862 1 SP7 MRPL48 COA4 PAAF1 FAM168A PLEKHB1 RN7SKP243 GC11M073833
GH11I073796 Enhancer 0.3 ENCODE 0.3 +36.6 36589 0.1 SP2 RAB6A ENSG00000256034 MRPL48 GC11M073833 RN7SKP243
GH11I073840 Enhancer 0.2 FANTOM5 0.4 -7.6 -7594 0.4 MRPL48 PLEKHB1 GC11M073833 RN7SKP243 CCDC58P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SKP243 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP243 Gene

Genomic Locations for RN7SKP243 Gene
chr11:73,832,382-73,832,690
(GRCh38/hg38)
Size:
309 bases
Orientation:
Minus strand
chr11:73,543,427-73,543,735
(GRCh37/hg19)

Genomic View for RN7SKP243 Gene

Genes around RN7SKP243 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP243 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP243 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP243 Gene

Proteins for RN7SKP243 Gene

Post-translational modifications for RN7SKP243 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP243 Gene

Domains & Families for RN7SKP243 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP243 Gene

Function for RN7SKP243 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP243 Gene

Localization for RN7SKP243 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP243 Gene

Pathways & Interactions for RN7SKP243 Gene

SuperPathways for RN7SKP243 Gene

No Data Available

Interacting Proteins for RN7SKP243 Gene

Gene Ontology (GO) - Biological Process for RN7SKP243 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP243 Gene

Drugs & Compounds for RN7SKP243 Gene

No Compound Related Data Available

Transcripts for RN7SKP243 Gene

mRNA/cDNA for RN7SKP243 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP243 Gene

No ASD Table

Relevant External Links for RN7SKP243 Gene

GeneLoc Exon Structure for
RN7SKP243
ECgene alternative splicing isoforms for
RN7SKP243

Expression for RN7SKP243 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP243 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP243 Gene:

RN7SKP243
genes like me logo Genes that share expression patterns with RN7SKP243: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP243 Gene

Orthologs for RN7SKP243 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP243 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24139 34
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 34
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 76 (a)
OneToMany
Species where no ortholog for RN7SKP243 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP243 Gene

ENSEMBL:
Gene Tree for RN7SKP243 (if available)
TreeFam:
Gene Tree for RN7SKP243 (if available)

Paralogs for RN7SKP243 Gene

No data available for Paralogs for RN7SKP243 Gene

Variants for RN7SKP243 Gene

Additional Variant Information for RN7SKP243 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP243

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP243 Gene

Disorders for RN7SKP243 Gene

No disorders were found for RN7SKP243 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP243 Gene

Publications for RN7SKP243 Gene

No publications were found for RN7SKP243 Gene.

Products for RN7SKP243 Gene

Sources for RN7SKP243 Gene

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