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RN7SKP241 Gene(Pseudogene)

RNA, 7SK Small Nuclear Pseudogene 241

GCID:
GC10M024908
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RN7SKP241 Gene

Subcategory (RNA class) for RN7SKP241 Gene

7SK RNA

Aliases for RN7SKP241 Gene

  • RNA, 7SK Small Nuclear Pseudogene 241 2 3 5

External Ids for RN7SKP241 Gene

ORGUL Members for RN7SKP241 Gene

Previous GeneCards Identifiers for RN7SKP241 Gene

  • GC10M025201

Summaries for RN7SKP241 Gene

GeneCards Summary for RN7SKP241 Gene

RN7SKP241 (RNA, 7SK Small Nuclear Pseudogene 241) is a Pseudogene, and is affiliated with the 7SK RNA class.

Additional gene information for RN7SKP241 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP241 Gene

Genomics for RN7SKP241 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RN7SKP241 Gene

Promoters and enhancers for RN7SKP241 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10I024909 Enhancer 1 ENCODE dbSUPER 550.8 -0.4 -399 1.5 ATF1 ARNT CHAMP1 TCF12 FOS ATF7 CREM CEBPB ZEB2 GMEB1 GC10M024909 RN7SKP241 ARHGAP21 PRTFDC1 ENSG00000273107
GH10I024908 Enhancer 0.4 ENCODE dbSUPER 550.8 +0.7 665 0.2 GC10M024909 RN7SKP241 PRTFDC1 ENSG00000228667
GH10I024912 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.8 -3.6 -3589 0.4 EBF1 ELF1 E4F1 EP300 FOSL1 SMARCA4 IKZF1 ETV6 PRDM10 RUNX3 GC10M024909 RN7SKP241 PRTFDC1 ENSG00000273107
GH10I024951 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -44.0 -43974 3.4 HDGF PKNOX1 SMAD1 ATF1 ARNT SIN3A ZNF2 POLR2B ZNF766 ZNF143 PRTFDC1 ENSG00000273107 THNSL1 GPR158 ARHGAP21 RN7SKP241 GC10M024909
GH10I024900 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.9 6861 3.6 HDGF PKNOX1 ATF1 SMAD1 ARNT SIN3A FEZF1 IRF4 BRCA1 TCF12 PRTFDC1 ARHGAP21 RN7SKP241 GC10M024909 ENSG00000228667
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SKP241 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP241 Gene

Genomic Locations for RN7SKP241 Gene
chr10:24,908,522-24,908,812
(GRCh38/hg38)
Size:
291 bases
Orientation:
Minus strand
chr10:25,197,451-25,197,741
(GRCh37/hg19)

Genomic View for RN7SKP241 Gene

Genes around RN7SKP241 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP241 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP241 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RN7SKP241 Gene

Proteins for RN7SKP241 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RN7SKP241 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP241 Gene

Domains & Families for RN7SKP241 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP241 Gene

Function for RN7SKP241 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RN7SKP241 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP241 Gene

Localization for RN7SKP241 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP241 Gene

Pathways & Interactions for RN7SKP241 Gene

SuperPathways for RN7SKP241 Gene

PathCards logo More details on SuperPathways for RN7SKP241
No Data Available

Interacting Proteins for RN7SKP241 Gene

Gene Ontology (GO) - Biological Process for RN7SKP241 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP241 Gene

Drugs & Compounds for RN7SKP241 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RN7SKP241 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RN7SKP241 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP241 Gene

No ASD Table

Relevant External Links for RN7SKP241 Gene

GeneLoc Exon Structure for
RN7SKP241
ECgene alternative splicing isoforms for
RN7SKP241

Expression for RN7SKP241 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP241 Gene

mRNA expression in normal human tissues for RN7SKP241 Gene
mRNA expression by GTEx for RN7SKP241 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP241 Gene:

RN7SKP241
genes like me logo Genes that share expression patterns with RN7SKP241: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP241 Gene

Orthologs for RN7SKP241 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP241 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia 7SK 34
  • 98 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia 7SK 34
  • 67 (a)
 ManyToMany
mouse
(Mus musculus)
 Mammalia Gm24447 34
  • 66 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia 7SK 34 34 34
  • 65 (a)
 ManyToMany
oppossum
(Monodelphis domestica)
 Mammalia 7SK 34
  • 63 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia 7SK 34
  • 71 (a)
 OneToMany
Species where no ortholog for RN7SKP241 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP241 Gene

ENSEMBL:
Gene Tree for RN7SKP241 (if available)
TreeFam:
Gene Tree for RN7SKP241 (if available)

Paralogs for RN7SKP241 Gene

No data available for Paralogs for RN7SKP241 Gene

Variants for RN7SKP241 Gene

Additional Variant Information for RN7SKP241 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP241

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP241 Gene

Disorders for RN7SKP241 Gene

No disorders were found for RN7SKP241 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP241 Gene

Publications for RN7SKP241 Gene

No publications were found for RN7SKP241 Gene.

Products for RN7SKP241 Gene

Sources for RN7SKP241 Gene

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