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Aliases for RN7SKP239 Gene

Subcategory (RNA class) for RN7SKP239 Gene


Aliases for RN7SKP239 Gene

  • RNA, 7SK Small Nuclear Pseudogene 239 2 3 5

External Ids for RN7SKP239 Gene

Previous GeneCards Identifiers for RN7SKP239 Gene

  • GC11P067132

Summaries for RN7SKP239 Gene

GeneCards Summary for RN7SKP239 Gene

RN7SKP239 (RNA, 7SK Small Nuclear Pseudogene 239) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP239 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

View fRNAdb secondary structures for RN7SKP239

Additional gene information for RN7SKP239 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP239 Gene

Genomics for RN7SKP239 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP239 Gene

Promoters and enhancers for RN7SKP239 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J067316 Promoter/Enhancer 1.6 Ensembl ENCODE 12.3 -44.8 -44843 2.3 HDGF SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF213 LOC100130987 RAD9A SSH3 MRPL11 ENSG00000258297 RBM4 KMT5B RBM14 GRK2 UNC93B1
GH11J067383 Enhancer 1.3 Ensembl ENCODE dbSUPER 13.2 +20.4 20386 0.8 HDGF ARNT ARID4B SIN3A ZNF2 ZBTB7B ZNF48 ZNF121 ARID2 ZNF207 ENSG00000258297 RAD9A KMT5B RBM4 RBM14 CORO1B RN7SKP239 POLD4 KDM2A CARNS1
GH11J067251 Enhancer 0.8 ENCODE dbSUPER 11.8 -108.7 -108719 3.5 HDGF CTCF PKNOX1 ZNF687 RFX1 CEBPB KLF4 RAD21 XRCC5 POLR2A SSH3 ANKRD13D POLD4 RN7SKP239 ENSG00000256514 CLCF1 PPP1CA RPS6KB2 RPS6KB2-AS1 PTPRCAP
GH11J067338 Enhancer 0.2 FANTOM5 12.9 -23.7 -23740 0.3 RN7SKP239 ENSG00000256514 CLCF1 SSH3 ANKRD13D PPP1CA PTPRCAP RPS6KB2 RPS6KB2-AS1 RHOD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SKP239 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP239 Gene

Genomic Locations for RN7SKP239 Gene
295 bases
Plus strand
295 bases
Plus strand

Genomic View for RN7SKP239 Gene

Genes around RN7SKP239 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP239 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP239 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP239 Gene

ORGUL Member Location for RN7SKP239 Gene

ORGUL Member Location for RN7SKP239 gene

Proteins for RN7SKP239 Gene

Post-translational modifications for RN7SKP239 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP239 Gene

Domains & Families for RN7SKP239 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP239 Gene

Function for RN7SKP239 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP239 Gene

Localization for RN7SKP239 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP239 Gene

Pathways & Interactions for RN7SKP239 Gene

SuperPathways for RN7SKP239 Gene

No Data Available

Interacting Proteins for RN7SKP239 Gene

Gene Ontology (GO) - Biological Process for RN7SKP239 Gene


No data available for Pathways by source and SIGNOR curated interactions for RN7SKP239 Gene

Drugs & Compounds for RN7SKP239 Gene

No Compound Related Data Available

Transcripts for RN7SKP239 Gene

fRNAdb Secondary structures for RN7SKP239 Gene

  • RF00100;7SK;AC231954.2/4855-4561

mRNA/cDNA for RN7SKP239 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP239 Gene

No ASD Table

Relevant External Links for RN7SKP239 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RN7SKP239 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP239 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP239 Gene:

genes like me logo Genes that share expression patterns with RN7SKP239: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP239 Gene

Orthologs for RN7SKP239 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP239 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia 7SK 34
  • 98 (a)
(Bos Taurus)
Mammalia 7SK 34
  • 59 (a)
Species where no ortholog for RN7SKP239 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP239 Gene

Gene Tree for RN7SKP239 (if available)
Gene Tree for RN7SKP239 (if available)

Paralogs for RN7SKP239 Gene

No data available for Paralogs for RN7SKP239 Gene

Variants for RN7SKP239 Gene

Additional Variant Information for RN7SKP239 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP239 Gene

Disorders for RN7SKP239 Gene

No disorders were found for RN7SKP239 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP239 Gene

Publications for RN7SKP239 Gene

  1. Transcription: surprising role for an elusive small nuclear RNA. (PMID: 11864590) Blencowe BJ (Current biology : CB 2002) 1
  2. Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function. (PMID: 1646389) Wassarman DA … Steitz JA (Molecular and cellular biology 1991) 1

Products for RN7SKP239 Gene

Sources for RN7SKP239 Gene

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