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Aliases for RN7SKP230 Gene

Subcategory (RNA class) for RN7SKP230 Gene

7SK RNA

Aliases for RN7SKP230 Gene

  • RNA, 7SK Small Nuclear Pseudogene 230 2 3 5

External Ids for RN7SKP230 Gene

ORGUL Members for RN7SKP230 Gene

Previous GeneCards Identifiers for RN7SKP230 Gene

  • GC05M109036

Summaries for RN7SKP230 Gene

GeneCards Summary for RN7SKP230 Gene

RN7SKP230 (RNA, 7SK Small Nuclear Pseudogene 230) is a Pseudogene, and is affiliated with the 7SK RNA class.

Additional gene information for RN7SKP230 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP230 Gene

Genomics for RN7SKP230 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP230 Gene

Promoters and enhancers for RN7SKP230 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J109688 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 11.4 +7.0 6996 9 PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 MAN2A1 RN7SKP230 ENSG00000271849 LOC285638 GC05M109700
GH05J109704 Enhancer 1.1 ENCODE dbSUPER 12.1 -7.4 -7438 6.4 ATF1 FOXA2 ARNT YY1 TCF12 ZNF766 GATA2 ATF7 RXRA NCOA1 RN7SKP230 LOC285638 ENSG00000271849 GC05M109698 GC05P109723 MAN2A1
GH05J109742 Enhancer 1.1 Ensembl ENCODE 11.6 -43.8 -43779 3.2 HDAC1 PKNOX1 FOXA2 TAF9B ARNT CHAMP1 ZNF335 TCF12 FOS CREM RN7SKP230 MAN2A1 ENSG00000271849 GC05P109723 GC05M109796
GH05J109739 Enhancer 0.8 Ensembl ENCODE 9.9 -40.6 -40631 2.4 USF1 NANOG ZNF189 SIN3A BATF ETS1 SP1 GATA3 POLR2A POU5F1 RN7SKP230 LOC285638 ENSG00000271849 GC05P109723 MAN2A1 GC05M109796
GH05J109758 Enhancer 0.6 Ensembl ENCODE 9.4 -59.5 -59492 1 FOSL1 SRF JUN RN7SKP230 ENSG00000271849 GC05P109723 GC05M109796 MAN2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP230 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP230 Gene

Genomic Locations for RN7SKP230 Gene
chr5:109,699,500-109,699,834
(GRCh38/hg38)
Size:
335 bases
Orientation:
Minus strand
chr5:109,035,201-109,035,535
(GRCh37/hg19)
Size:
335 bases
Orientation:
Minus strand

Genomic View for RN7SKP230 Gene

Genes around RN7SKP230 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP230 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP230 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP230 Gene

Proteins for RN7SKP230 Gene

Post-translational modifications for RN7SKP230 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP230 Gene

Domains & Families for RN7SKP230 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP230 Gene

Function for RN7SKP230 Gene

Phenotypes From GWAS Catalog for RN7SKP230 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP230 Gene

Localization for RN7SKP230 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP230 Gene

Pathways & Interactions for RN7SKP230 Gene

SuperPathways for RN7SKP230 Gene

No Data Available

Interacting Proteins for RN7SKP230 Gene

Gene Ontology (GO) - Biological Process for RN7SKP230 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP230 Gene

Drugs & Compounds for RN7SKP230 Gene

No Compound Related Data Available

Transcripts for RN7SKP230 Gene

mRNA/cDNA for RN7SKP230 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP230 Gene

No ASD Table

Relevant External Links for RN7SKP230 Gene

GeneLoc Exon Structure for
RN7SKP230
ECgene alternative splicing isoforms for
RN7SKP230

Expression for RN7SKP230 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP230 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP230 Gene

This gene is overexpressed in Testis (x34.9).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP230 Gene:

RN7SKP230
genes like me logo Genes that share expression patterns with RN7SKP230: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP230 Gene

Orthologs for RN7SKP230 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SKP230 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34 34
  • 96 (a)
OneToMany
Species where no ortholog for RN7SKP230 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP230 Gene

ENSEMBL:
Gene Tree for RN7SKP230 (if available)
TreeFam:
Gene Tree for RN7SKP230 (if available)

Paralogs for RN7SKP230 Gene

No data available for Paralogs for RN7SKP230 Gene

Variants for RN7SKP230 Gene

Additional Variant Information for RN7SKP230 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP230

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP230 Gene

Disorders for RN7SKP230 Gene

No disorders were found for RN7SKP230 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP230 Gene

Publications for RN7SKP230 Gene

No publications were found for RN7SKP230 Gene.

Products for RN7SKP230 Gene

Sources for RN7SKP230 Gene

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