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Aliases for RN7SKP2 Gene

Subcategory (RNA class) for RN7SKP2 Gene

lncRNA

Aliases for RN7SKP2 Gene

  • RNA, 7SK Small Nuclear Pseudogene 2 2 3 5

External Ids for RN7SKP2 Gene

ORGUL Members for RN7SKP2 Gene

Previous GeneCards Identifiers for RN7SKP2 Gene

  • GC00U933764
  • GC13M040982

Summaries for RN7SKP2 Gene

GeneCards Summary for RN7SKP2 Gene

RN7SKP2 (RNA, 7SK Small Nuclear Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SKP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP2 Gene

Genomics for RN7SKP2 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP2 Gene

Promoters and enhancers for RN7SKP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J040406 Enhancer 0.8 Ensembl ENCODE 650.7 +0.6 636 1.5 JUN USF2 EP300 NR2F2 SP1 ATF3 FOSL2 RCOR1 ZBTB17 RN7SKP2 GC13M040373 LINC00548 LINC00598
GH13J040401 Enhancer 1.1 Ensembl ENCODE 0.7 +4.7 4696 2.7 HDAC1 ELF3 FOXA2 NFIB BATF RAD21 RARA YY1 RCOR1 FOS FOXO1 RN7SKP2 GC13M040373 LINC00598 LINC00548
GH13J040444 Enhancer 1 Ensembl ENCODE 0.3 -38.3 -38265 2.1 HDGF PKNOX1 RB1 STAT5A BMI1 YBX1 BATF KLF5 IRF4 ZNF366 FOXO1 GC13P040478 RN7SKP2 LINC00598 LINC00548
GH13J040475 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.2 -70.0 -70037 3.2 ELF3 FOXA2 MLX ARID4B DMAP1 ZNF48 RAD21 YY1 ZNF614 EGR1 GC13P040478 FOXO1 LINC00598 LINC00548 RN7SKP2
GH13J040438 Enhancer 0.9 Ensembl ENCODE 0.3 -32.6 -32575 3.9 FOXA2 MAX RAD21 YY1 GATA3 EGR1 HNF4G MAFK TCF7L2 RXRA FOXO1 SUGT1P3 RN7SKP2 GC13P040478 LINC00598 LINC00548
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP2 Gene

Genomic Locations for RN7SKP2 Gene
chr13:40,407,122-40,407,440
(GRCh38/hg38)
Size:
319 bases
Orientation:
Minus strand
chr13:40,981,259-40,981,577
(GRCh37/hg19)
Size:
319 bases
Orientation:
Minus strand

Genomic View for RN7SKP2 Gene

Genes around RN7SKP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP2 Gene

Function for RN7SKP2 Gene

Phenotypes From GWAS Catalog for RN7SKP2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP2 Gene

Localization for RN7SKP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP2 Gene

Pathways & Interactions for RN7SKP2 Gene

SuperPathways for RN7SKP2 Gene

No Data Available

Interacting Proteins for RN7SKP2 Gene

Gene Ontology (GO) - Biological Process for RN7SKP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP2 Gene

Drugs & Compounds for RN7SKP2 Gene

No Compound Related Data Available

Transcripts for RN7SKP2 Gene

mRNA/cDNA for RN7SKP2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP2 Gene

No ASD Table

Relevant External Links for RN7SKP2 Gene

GeneLoc Exon Structure for
RN7SKP2
ECgene alternative splicing isoforms for
RN7SKP2

Expression for RN7SKP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP2 Gene:

RN7SKP2
genes like me logo Genes that share expression patterns with RN7SKP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP2 Gene

Orthologs for RN7SKP2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 34
  • 48 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22839 34
  • 44 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 7SK 34
  • 44 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 7SK 34
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 34 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii 7SK 34
  • 49 (a)
OneToMany
Species where no ortholog for RN7SKP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SKP2 Gene

ENSEMBL:
Gene Tree for RN7SKP2 (if available)
TreeFam:
Gene Tree for RN7SKP2 (if available)

Paralogs for RN7SKP2 Gene

No data available for Paralogs for RN7SKP2 Gene

Variants for RN7SKP2 Gene

Additional Variant Information for RN7SKP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP2 Gene

Disorders for RN7SKP2 Gene

No disorders were found for RN7SKP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP2 Gene

Publications for RN7SKP2 Gene

No publications were found for RN7SKP2 Gene.

Products for RN7SKP2 Gene

Sources for RN7SKP2 Gene

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