Aliases for RN7SKP197 Gene

Aliases for RN7SKP197 Gene

  • RN7SK Pseudogene 197 2 3 5
  • RNA, 7SK Small Nuclear Pseudogene 197 2 3
  • RN7SKP197 5

External Ids for RN7SKP197 Gene

Previous GeneCards Identifiers for RN7SKP197 Gene

  • GC12M120069

Summaries for RN7SKP197 Gene

GeneCards Summary for RN7SKP197 Gene

RN7SKP197 (RN7SK Pseudogene 197) is a Pseudogene.

Additional gene information for RN7SKP197 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SKP197 Gene

Genomics for RN7SKP197 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RN7SKP197 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J118958 Enhancer 0.2 Ensembl 4.6 +672.5 672485 1 RN7SKP197 lnc-TAOK3-7 lnc-TAOK3-13 SRRM4 SUDS3
GH12J119659 Enhancer 0.8 Ensembl ENCODE 0.3 -28.7 -28714 1.8 CTCF FOXA1 PRDM1 ZNF143 PKNOX1 REST TRIM22 RAD21 HMBOX1 GABPA PRKAB1 ENSG00000248636 LOC105370027 RN7SKP197 lnc-CIT-7 TMEM233
GH12J119613 Enhancer 0.7 Ensembl ENCODE 0.4 +17.8 17798 0.4 JUND SCRT2 FOXA2 FOSL1 FOXA1 HIC1 GLIS1 FOS MEIS2 ENSG00000248636 piR-32023-065 RN7SKP197 lnc-CIT-7 TMEM233 LOC105370027 PRKAB1
GH12J119664 Enhancer 0.6 ENCODE dbSUPER 0.3 -33.5 -33485 0.1 SP1 NR2F6 HNF4A RXRA MAX ZNF83 ENSG00000248636 LOC105370027 PRKAB1 lnc-CIT-7 RN7SKP197 TMEM233
GH12J119662 Enhancer 0.6 dbSUPER 0.3 -31.3 -31275 0.7 DPF2 HDAC1 CTBP1 MNT TRIM24 EHMT2 ZNF592 FOXK2 ZEB2 L3MBTL2 PRKAB1 ENSG00000248636 LOC105370027 lnc-CIT-7 RN7SKP197 TMEM233
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP197 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RN7SKP197 Gene

Genomic Locations for RN7SKP197 Gene
chr12:119,631,090-119,631,386
(GRCh38/hg38)
Size:
297 bases
Orientation:
Minus strand
chr12:120,068,895-120,069,191
(GRCh37/hg19)
Size:
297 bases
Orientation:
Minus strand

Genomic View for RN7SKP197 Gene

Genes around RN7SKP197 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP197 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP197 Gene

Proteins for RN7SKP197 Gene

Post-translational modifications for RN7SKP197 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP197 Gene

Domains & Families for RN7SKP197 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SKP197 Gene

Function for RN7SKP197 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP197 Gene

Localization for RN7SKP197 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP197 Gene

Pathways & Interactions for RN7SKP197 Gene

PathCards logo

SuperPathways for RN7SKP197 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RN7SKP197 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SKP197 Gene

Drugs & Compounds for RN7SKP197 Gene

No Compound Related Data Available

Transcripts for RN7SKP197 Gene

mRNA/cDNA for RN7SKP197 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP197 Gene

No ASD Table

Relevant External Links for RN7SKP197 Gene

GeneLoc Exon Structure for
RN7SKP197

Expression for RN7SKP197 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP197 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP197 Gene

This gene is overexpressed in Muscle - Skeletal (x35.1) and Thyroid (x9.2).
genes like me logo Genes that share expression patterns with RN7SKP197: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP197 Gene

Orthologs for RN7SKP197 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP197 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia 7SK 31 31
  • 89 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia 7SK 31
  • 59 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24363 31
  • 41 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia 7SK 31
  • 41 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia 7SK 31
  • 40 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii 7SK 31
  • 42 (a)
OneToMany
Species where no ortholog for RN7SKP197 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RN7SKP197 Gene

ENSEMBL:
Gene Tree for RN7SKP197 (if available)
TreeFam:
Gene Tree for RN7SKP197 (if available)

Paralogs for RN7SKP197 Gene

No data available for Paralogs for RN7SKP197 Gene

Variants for RN7SKP197 Gene

Additional Variant Information for RN7SKP197 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP197

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP197 Gene

Disorders for RN7SKP197 Gene

No disorders were found for RN7SKP197 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP197 Gene

Publications for RN7SKP197 Gene

No publications were found for RN7SKP197 Gene.

No data available for Mastermind for RN7SKP197 Gene

Products for RN7SKP197 Gene

Sources for RN7SKP197 Gene