Aliases for RN7SKP183 Gene

Aliases for RN7SKP183 Gene

  • RN7SK Pseudogene 183 2 3 5
  • RNA, 7SK Small Nuclear Pseudogene 183 2 3

External Ids for RN7SKP183 Gene

Summaries for RN7SKP183 Gene

GeneCards Summary for RN7SKP183 Gene

RN7SKP183 (RN7SK Pseudogene 183) is a Pseudogene.

Additional gene information for RN7SKP183 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RN7SKP183 Gene

Genomics for RN7SKP183 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP183 Gene

Promoters and enhancers for RN7SKP183 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ020452 Enhancer 0.3 Ensembl 500.7 +0.8 792 1.4 BATF JUNB RN7SKP183 RF00100-159 lnc-CNKSR2-3 RPS6KA3 ENSG00000283400 piR-31534-711
GH0XJ020471 Enhancer 1 ENCODE dbSUPER 0.4 +19.6 19570 0.2 EP300 NCOR1 TCF7 TEAD1 TBX3 FOXA2 CEBPB SAP130 MIER3 HDAC1 lnc-CNKSR2-3 RF00100-159 RN7SKP183 ENSG00000283400 piR-31534-711
GH0XJ020476 Enhancer 1 ENCODE dbSUPER 0.3 +26.7 26665 5.5 TCF12 NCOR1 KDM6A TCF7 FOXA1 SKI TEAD1 FOXA2 MAFF TBP RPS6KA3 lnc-CNKSR2-3 RF00100-159 RN7SKP183 ENSG00000283400 piR-31534-711
GH0XJ020513 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 +63.0 62993 7 TCF12 SP1 JUND FOS TRIM28 MEF2C EP300 TEAD1 ZEB1 BCL11A piR-31534-711 RF00100-159 RN7SKP183 lnc-CNKSR2-3
GH0XJ020461 Enhancer 0.6 Ensembl ENCODE 0.4 +9.4 9433 1.1 ZNF263 FOS JUN RF00100-159 lnc-CNKSR2-3 RN7SKP183 ENSG00000283400 piR-31534-711
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RN7SKP183 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP183 Gene

Genomic Locations for RN7SKP183 Gene
chrX:20,452,108-20,452,431
(GRCh38/hg38)
Size:
324 bases
Orientation:
Plus strand
chrX:20,470,226-20,470,549
(GRCh37/hg19)
Size:
324 bases
Orientation:
Plus strand

Genomic View for RN7SKP183 Gene

Genes around RN7SKP183 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP183 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP183 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP183 Gene

Proteins for RN7SKP183 Gene

Post-translational modifications for RN7SKP183 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP183 Gene

Domains & Families for RN7SKP183 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RN7SKP183 Gene

Function for RN7SKP183 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP183 Gene

Localization for RN7SKP183 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP183 Gene

Pathways & Interactions for RN7SKP183 Gene

PathCards logo

SuperPathways for RN7SKP183 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RN7SKP183 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RN7SKP183 Gene

Drugs & Compounds for RN7SKP183 Gene

No Compound Related Data Available

Transcripts for RN7SKP183 Gene

mRNA/cDNA for RN7SKP183 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP183 Gene

No ASD Table

Relevant External Links for RN7SKP183 Gene

GeneLoc Exon Structure for
RN7SKP183

Expression for RN7SKP183 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP183 Gene

genes like me logo Genes that share expression patterns with RN7SKP183: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP183 Gene

Orthologs for RN7SKP183 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP183 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 31
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 31
  • 58 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22665 31
  • 43 (a)
OneToOne
chicken
(Gallus gallus)
Aves 7SK 31
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 31
  • 62 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea 7SK 31 31 31
  • 34 (a)
ManyToMany
Species where no ortholog for RN7SKP183 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP183 Gene

ENSEMBL:
Gene Tree for RN7SKP183 (if available)
TreeFam:
Gene Tree for RN7SKP183 (if available)

Paralogs for RN7SKP183 Gene

No data available for Paralogs for RN7SKP183 Gene

Variants for RN7SKP183 Gene

Additional Variant Information for RN7SKP183 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP183

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP183 Gene

Disorders for RN7SKP183 Gene

No disorders were found for RN7SKP183 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP183 Gene

Publications for RN7SKP183 Gene

No publications were found for RN7SKP183 Gene.

No data available for Mastermind for RN7SKP183 Gene

Products for RN7SKP183 Gene

Sources for RN7SKP183 Gene