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Aliases for RN7SKP161 Gene

Subcategory (RNA class) for RN7SKP161 Gene

7SK RNA

Aliases for RN7SKP161 Gene

  • RNA, 7SK Small Nuclear Pseudogene 161 2 3 5

External Ids for RN7SKP161 Gene

ORGUL Members for RN7SKP161 Gene

Previous GeneCards Identifiers for RN7SKP161 Gene

  • GC12P010237

Summaries for RN7SKP161 Gene

GeneCards Summary for RN7SKP161 Gene

RN7SKP161 (RNA, 7SK Small Nuclear Pseudogene 161) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP161 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

Additional gene information for RN7SKP161 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP161 Gene

Genomics for RN7SKP161 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP161 Gene

Promoters and enhancers for RN7SKP161 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I010066 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.0 -15979 4.2 MEIS2 PKNOX1 JUN HLF MAX NR2F2 POLR2A MAFK MYC SETDB1 CLEC7A LINC02470 CLEC2B CLEC12A OLR1 RN7SKP161 ENSG00000256626 CLEC1A
GH12I010096 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 0.4 +14.1 14079 3 PRDM6 TAF1 POLR2A CLEC1A CLEC7A GC12P010105 RN7SKP161
GH12I010051 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE dbSUPER 0.3 -31.7 -31735 1.1 BATF CLEC9A ENSG00000256626 RN7SKP161
GH12I010100 Enhancer 0.7 Ensembl ENCODE 0.4 +17.6 17587 2.4 ZFHX2 RFX1 FEZF1 RFX5 GC12P010105 CLEC7A LINC02470 CLEC1A MAGOHB RN7SKP161
GH12I010089 Enhancer 0.6 Ensembl 0.4 +5.8 5815 0.8 NR2F1 ZNF10 BACH1 JUNB ATF2 RELA ZFHX2 IKZF1 ATF7 BCLAF1 CLEC7A CLEC1A RN7SKP161 GC12P010105
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SKP161 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP161 Gene

Genomic Locations for RN7SKP161 Gene
chr12:10,084,186-10,084,490
(GRCh38/hg38)
Size:
305 bases
Orientation:
Plus strand
chr12:10,236,785-10,237,089
(GRCh37/hg19)

Genomic View for RN7SKP161 Gene

Genes around RN7SKP161 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP161 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP161 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP161 Gene

Proteins for RN7SKP161 Gene

Post-translational modifications for RN7SKP161 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP161 Gene

Domains & Families for RN7SKP161 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP161 Gene

Function for RN7SKP161 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP161 Gene

Localization for RN7SKP161 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP161 Gene

Pathways & Interactions for RN7SKP161 Gene

SuperPathways for RN7SKP161 Gene

No Data Available

Interacting Proteins for RN7SKP161 Gene

Gene Ontology (GO) - Biological Process for RN7SKP161 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP161 Gene

Drugs & Compounds for RN7SKP161 Gene

No Compound Related Data Available

Transcripts for RN7SKP161 Gene

mRNA/cDNA for RN7SKP161 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP161 Gene

No ASD Table

Relevant External Links for RN7SKP161 Gene

GeneLoc Exon Structure for
RN7SKP161
ECgene alternative splicing isoforms for
RN7SKP161

Expression for RN7SKP161 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP161 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP161 Gene:

RN7SKP161
genes like me logo Genes that share expression patterns with RN7SKP161: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP161 Gene

Orthologs for RN7SKP161 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP161 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34 34
  • 87 (a)
OneToMany
cow
(Bos Taurus)
Mammalia 7SK 34
  • 65 (a)
OneToOne
Species where no ortholog for RN7SKP161 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP161 Gene

ENSEMBL:
Gene Tree for RN7SKP161 (if available)
TreeFam:
Gene Tree for RN7SKP161 (if available)

Paralogs for RN7SKP161 Gene

No data available for Paralogs for RN7SKP161 Gene

Variants for RN7SKP161 Gene

Additional Variant Information for RN7SKP161 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP161

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP161 Gene

Disorders for RN7SKP161 Gene

No disorders were found for RN7SKP161 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP161 Gene

Publications for RN7SKP161 Gene

No publications were found for RN7SKP161 Gene.

Products for RN7SKP161 Gene

Sources for RN7SKP161 Gene

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