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Aliases for RMDN2-AS1 Gene

Subcategory (RNA class) for RMDN2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RMDN2-AS1 Gene

  • RMDN2 Antisense RNA 1 2 3 5

External Ids for RMDN2-AS1 Gene

Previous GeneCards Identifiers for RMDN2-AS1 Gene

  • GC02M038178

Summaries for RMDN2-AS1 Gene

GeneCards Summary for RMDN2-AS1 Gene

RMDN2-AS1 (RMDN2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RMDN2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RMDN2-AS1 Gene

Genomics for RMDN2-AS1 Gene

GeneHancer (GH) Regulatory Elements for RMDN2-AS1 Gene

Promoters and enhancers for RMDN2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I038066 Enhancer 0.4 ENCODE dbSUPER 550.8 +0.4 368 0.2 RMDN2-AS1 CYP1B1 LOC100419680 RMDN2
GH02I038067 Enhancer 0.4 dbSUPER 550.8 -1.3 -1292 1.3 RCOR1 CHD2 RMDN2-AS1 CYP1B1 CYP1B1-AS1 RMDN2
GH02I038095 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -30.3 -30265 4.6 PKNOX1 CLOCK ARNT NEUROD1 FEZF1 ZBTB7B GLIS2 ZNF213 KLF7 FOS ENSG00000272054 CYP1B1 CYP1B1-AS1 SRSF7 DHX57 ARHGEF33 RMDN2-AS1 HNRNPLL CEBPZ CDC42EP3
GH02I038036 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +29.4 29410 2.9 HDGF SMAD1 BATF RAD21 SCRT2 ZNF143 ATF7 IKZF2 RUNX3 SMARCA5 CYP1B1 CYP1B1-AS1 CDC42EP3 LOC100419680 RMDN2-AS1 RMDN2
GH02I037982 Enhancer 0.9 Ensembl ENCODE 0.2 +84.7 84666 0.5 CTCF RB1 TEAD4 EBF1 RAD21 FOXM1 ZNF664 FOXK2 SMC3 ZNF143 RMDN2 GC02P037956 LOC100419680 RMDN2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RMDN2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RMDN2-AS1 Gene

Genomic Locations for RMDN2-AS1 Gene
chr2:37,949,911-38,067,041
(GRCh38/hg38)
Size:
117,131 bases
Orientation:
Minus strand
chr2:38,177,144-38,294,184
(GRCh37/hg19)

Genomic View for RMDN2-AS1 Gene

Genes around RMDN2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RMDN2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RMDN2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RMDN2-AS1 Gene

Proteins for RMDN2-AS1 Gene

Post-translational modifications for RMDN2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RMDN2-AS1 Gene

Domains & Families for RMDN2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RMDN2-AS1 Gene

Function for RMDN2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RMDN2-AS1 Gene

Localization for RMDN2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RMDN2-AS1 Gene

Pathways & Interactions for RMDN2-AS1 Gene

SuperPathways for RMDN2-AS1 Gene

No Data Available

Interacting Proteins for RMDN2-AS1 Gene

Gene Ontology (GO) - Biological Process for RMDN2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RMDN2-AS1 Gene

Drugs & Compounds for RMDN2-AS1 Gene

No Compound Related Data Available

Transcripts for RMDN2-AS1 Gene

mRNA/cDNA for RMDN2-AS1 Gene

(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RMDN2-AS1 Gene

No ASD Table

Relevant External Links for RMDN2-AS1 Gene

GeneLoc Exon Structure for
RMDN2-AS1
ECgene alternative splicing isoforms for
RMDN2-AS1

Expression for RMDN2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RMDN2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RMDN2-AS1 Gene

This gene is overexpressed in Testis (x6.5) and Prostate (x4.5).
genes like me logo Genes that share expression patterns with RMDN2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RMDN2-AS1 Gene

Orthologs for RMDN2-AS1 Gene

Evolution for RMDN2-AS1 Gene

ENSEMBL:
Gene Tree for RMDN2-AS1 (if available)
TreeFam:
Gene Tree for RMDN2-AS1 (if available)

No data available for Orthologs for RMDN2-AS1 Gene

Paralogs for RMDN2-AS1 Gene

No data available for Paralogs for RMDN2-AS1 Gene

Variants for RMDN2-AS1 Gene

Sequence variations from dbSNP and Humsavar for RMDN2-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000068823 -- 37,973,605(-) AA/AAA intron_variant
rs1000079243 -- 38,005,257(-) G/T intron_variant
rs1000100272 -- 37,986,390(-) A/G intron_variant
rs1000126667 -- 37,968,460(-) A/T intron_variant
rs1000152540 -- 37,986,600(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RMDN2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6787n54 CNV loss 21841781
esv2659660 CNV deletion 23128226
esv2671607 CNV deletion 23128226
esv2719941 CNV deletion 23290073
esv3590412 CNV loss 21293372

Additional Variant Information for RMDN2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RMDN2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RMDN2-AS1 Gene

Disorders for RMDN2-AS1 Gene

Additional Disease Information for RMDN2-AS1

No disorders were found for RMDN2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RMDN2-AS1 Gene

Publications for RMDN2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for RMDN2-AS1 Gene

Sources for RMDN2-AS1 Gene

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