Aliases for RLIMP1 Gene

Aliases for RLIMP1 Gene

  • Ring Finger Protein, LIM Domain Interacting Pseudogene 1 2 3 5
  • Ring Finger Protein (C3H2C3 Type) 6 Pseudogene 3
  • RLIMP1 5

External Ids for RLIMP1 Gene

Previous GeneCards Identifiers for RLIMP1 Gene

  • GC13U900834
  • GC13P041194

Summaries for RLIMP1 Gene

GeneCards Summary for RLIMP1 Gene

RLIMP1 (Ring Finger Protein, LIM Domain Interacting Pseudogene 1) is a Pseudogene.

Additional gene information for RLIMP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RLIMP1 Gene

Genomics for RLIMP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RLIMP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J040618 Enhancer 0.3 ENCODE dbSUPER 600.7 -1.2 -1165 0.7 RLIMP1 lnc-SLC25A15-7 piR-50437-138 WBP4 SLC25A15 ENSG00000288542 FOXO1 COG6
GH13J040617 Enhancer 0.3 ENCODE dbSUPER 600.7 -0.7 -667 0.2 RLIMP1 lnc-SLC25A15-7 piR-50437-138 ENSG00000288542 FOXO1 COG6
GH13J041178 Enhancer 0.8 Ensembl ENCODE 4.4 +560.2 560175 4.8 RFX1 FOXJ2 CEBPA SOX13 RFX3 NFE2 ZNF316 FOXA2 MAFF MAFK SNODB613 NAA16 MRPS31 MTRF1 KBTBD7 RLIMP1 piR-50968-035 ENSG00000278390 KBTBD6 LOC101929140
GH13J041144 Enhancer 0.4 Ensembl ENCODE 4.4 +526.7 526717 1.7 PKNOX1 RLIMP1 lnc-KBTBD6-1 LOC101929140 ENSG00000278390 KBTBD6 KBTBD7
GH13J040605 Enhancer 0.2 dbSUPER 4.5 -12.9 -12883 1.2 FOXO1 RLIMP1 ENSG00000288542 RF00994-270 COG6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RLIMP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RLIMP1 Gene

Genomic Locations for RLIMP1 Gene
chr13:40,618,626-40,621,547
(GRCh38/hg38)
Size:
2,922 bases
Orientation:
Plus strand
chr13:41,192,875-41,195,485
(GRCh37/hg19)
Size:
2,611 bases
Orientation:
Plus strand

Genomic View for RLIMP1 Gene

Genes around RLIMP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RLIMP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RLIMP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RLIMP1 Gene

Proteins for RLIMP1 Gene

Post-translational modifications for RLIMP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RLIMP1 Gene

Domains & Families for RLIMP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RLIMP1 Gene

Function for RLIMP1 Gene

Phenotypes From GWAS Catalog for RLIMP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RLIMP1 Gene

Localization for RLIMP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RLIMP1 Gene

Pathways & Interactions for RLIMP1 Gene

PathCards logo

SuperPathways for RLIMP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RLIMP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RLIMP1 Gene

Drugs & Compounds for RLIMP1 Gene

No Compound Related Data Available

Transcripts for RLIMP1 Gene

mRNA/cDNA for RLIMP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RLIMP1 Gene

No ASD Table

Relevant External Links for RLIMP1 Gene

GeneLoc Exon Structure for
RLIMP1

Expression for RLIMP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RLIMP1 Gene

genes like me logo Genes that share expression patterns with RLIMP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RLIMP1 Gene

Orthologs for RLIMP1 Gene

Evolution for RLIMP1 Gene

ENSEMBL:
Gene Tree for RLIMP1 (if available)
TreeFam:
Gene Tree for RLIMP1 (if available)

No data available for Orthologs for RLIMP1 Gene

Paralogs for RLIMP1 Gene

No data available for Paralogs for RLIMP1 Gene

Variants for RLIMP1 Gene

Additional Variant Information for RLIMP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RLIMP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RLIMP1 Gene

Disorders for RLIMP1 Gene

No disorders were found for RLIMP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RLIMP1 Gene

Publications for RLIMP1 Gene

No publications were found for RLIMP1 Gene.

Products for RLIMP1 Gene

Sources for RLIMP1 Gene